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Molecular characterization of some Atriplex species in Syria

التوصيف الجزيئي لبعض أنواع جنس الرغل Atriplex المنتشرة في سورية

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 Publication date 2012
and research's language is العربية
 Created by Shamra Editor




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This investigation was carried out at the Laboratory of Biotechnology at General Commission for Scientific Agricultural Research (GCSAR), during the season 2010-2011. The aim of this research was to study the genetic diversity among twenty individual plants of seven species and to determine the degree of genetic similarity using the technique ISSR (Inter Simple Sequence Repeats) and 10 primers were used for this purpose. All primers proved their effectiveness in showing polymorphism between the studied species, primers gave a total 195 allele with a polymorphic percentage 100%. The number of bands for each primer varied from a minimum of 12 bands for the primer (ISSR-4) to a maximum of 27 bands for the primer (ISSR-862) in an average of 19.5 bands for each primer, cluster analysis and Dendrogram showed the highest degree of genetic similarity between accession A.leucoclada1 and A.leucoclada2 (0.64), while it was low between species A.leucoclada3 and A.glauca2 (0.10). Results showed vast genetic diversity among the studied species.



References used
Bornet, B.; Goraguer, F.; Joly, G. and Branchard, M. (2002). Genetic diversity in European and Argentinean cultivated potatoes (Solanum tuberosum subsp. tuberosum) detected by inter-simple sequence repeats (ISSRs). Genome 45: 481-484
Bouda, S.; Haddioui, A.; Baaziz, M.; Del Campo, F.F. and Hernández, L.E. (2006). Genetic diversity characterization of genus Atriplex using RAPD markers. Congrès International de Biochimie. Agadir, 09-12 Mai 2006. 64- 68
Chowdhury, M.A.; Vandenberg, B. and Warkentin, T. (2002). Cultivar identification and genetic relationship among selected breeding lines and cultivars in chickpea (Cicer arietinum L.). Euphytica 127: 317–325
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Ephedra is a dioecious, drought- and frost-resistant, perennial, evergreen shrub with high medicinal value due to its content of ephedrine alkaloids. It became quite clear throughout referential studies that this significant medical plant which is spontaneously widespread in Syria and there have been an increased international demand on it hasn’t been studied yet.
Atriplex is one of good adaptive plants to the Characteristics of drought fragile environments, and it has high ability to tolerate many ecological stresses such as drought and high temperature and salinity. The plant is characterized by its huge economic values because it has many uses, it’s one of the high digestibility grazing plants and it is grazing by camels, goats and sheep all the year, some of them have medicinally uses in repairing the increasing of blood sugar, the freshness parts of some species use in preparing salads, even they have cook using, and leaves usually have a salty taste even the plant grow in none salinity soils. The morphological variety of four species of Atriplex were studying, two of them are introduced (A. canescens, A. polycarpa) and two have natural spreading in Syria (A. leucoclada, A. halimus). The results indicated that biological type, life duration, plants color, fruit bracts shape and fused of fruit bracts, plant smell, seed color, leaves shape and phyllotaxy are considered the most morphological characters which show important morphological differences among the studying species. These can be considered among classification standards to help distinguish the studying species of Atriplex genus under their natural spreading land, which consider the natural habitat for this important plant. Based on studied morphological characters, an identification key for the studying species is provided.
This research was carried out in molecular biology laboratory faculty of agriculture /Damascus University during the agriculture season 2015-2016, to study the genetic diversity and determine the degree of genetic similarity among eleven 11 cultiv ated vetch (Aleppo, Idleb, Kamishly, Hassekeh, Tartous, Lattakia, Homs, Hama, Sweida, Damascus,Daraa) by using the technique ISSR.
The objective of this study was to characterize and determine the genetic variation among twelve cultivars and four rootstocks, belonging to Amygdalus genus in Syria using the simple sequence repeats (SSRs) marker. It was found that 154 alleles we re identified by using 26 primer pairs, and the proportion of the specific ones was 30.52%. In addition, it was revealed that all the studied SSR loci produced polymorphic alleles. The average of PIC, He and Ho were 0.58, 0.61, 0.31, respectively.
Morphological and molecular characterization for six seedling genotypes of Pistachio vera L (V1,V2,V3,V4,V5, and V6) in comparison with the most commercial and wide spread varieties, Ashoury andWhite batoury was carried out in Swaida province, sou thern of Syria. Nuts chemical contents (dry substance, moisture, total sugar and oil content) for both fresh and dry nuts weight were also evaluated. Seedling genotypes showed obvious differences toward the main diagnostic traits, such as alternate bearing phenomena, the ratio of kernel weight to total nut weight, split nuts percentage and loss percentage. Genotype V4 was recognized by some important characters compared with the other genotypes studied. Cluster analysis was assessed according to the existence or absence of the most important studying morphological and agronomic indexes. All genotypes studied and comparative cultivars were clustered into four groups. RAPD technique was achieved using 25 randomly primers, 19 of which were polymorphic with an average of polymorphism percentage of (66.47%). The highest value of genetic similarity (0.81) was between Ashoury and V5 genotype, whereas the lowest value (0.56) was between V3 and V6. Cluster analysis depending on RAPD data divided the population studied into two main groups. RAPD unique band was estimated (37 unique band, 21 positive and 16 negative). It was concluded that RAPD technique can be used efficiently to emphasize, identify, insure and evaluate the genetic diversity of Pistachio vera.

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