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Named entity disambiguation (NED), which involves mapping textual mentions to structured entities, is particularly challenging in the medical domain due to the presence of rare entities. Existing approaches are limited by the presence of coarse-grain ed structural resources in biomedical knowledge bases as well as the use of training datasets that provide low coverage over uncommon resources. In this work, we address these issues by proposing a cross-domain data integration method that transfers structural knowledge from a general text knowledge base to the medical domain. We utilize our integration scheme to augment structural resources and generate a large biomedical NED dataset for pretraining. Our pretrained model with injected structural knowledge achieves state-of-the-art performance on two benchmark medical NED datasets: MedMentions and BC5CDR. Furthermore, we improve disambiguation of rare entities by up to 57 accuracy points.
This paper presents the PALI team's winning system for SemEval-2021 Task 2: Multilingual and Cross-lingual Word-in-Context Disambiguation. We fine-tune XLM-RoBERTa model to solve the task of word in context disambiguation, i.e., to determine whether the target word in the two contexts contains the same meaning or not. In implementation, we first specifically design an input tag to emphasize the target word in the contexts. Second, we construct a new vector on the fine-tuned embeddings from XLM-RoBERTa and feed it to a fully-connected network to output the probability of whether the target word in the context has the same meaning or not. The new vector is attained by concatenating the embedding of the [CLS] token and the embeddings of the target word in the contexts. In training, we explore several tricks, such as the Ranger optimizer, data augmentation, and adversarial training, to improve the model prediction. Consequently, we attain the first place in all four cross-lingual tasks.
While aggregate performance metrics can generate valuable insights at a large scale, their dominance means more complex and nuanced language phenomena, such as vagueness, may be overlooked. Focusing on vague terms (e.g. sunny, cloudy, young, etc.) we inspect the behavior of visually grounded and text-only models, finding systematic divergences from human judgments even when a model's overall performance is high. To help explain this disparity, we identify two assumptions made by the datasets and models examined and, guided by the philosophy of vagueness, isolate cases where they do not hold.
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