Scientific literature analysis needs fine-grained named entity recognition (NER) to provide a wide range of information for scientific discovery. For example, chemistry research needs to study dozens to hundreds of distinct, fine-grained entity types
, making consistent and accurate annotation difficult even for crowds of domain experts. On the other hand, domain-specific ontologies and knowledge bases (KBs) can be easily accessed, constructed, or integrated, which makes distant supervision realistic for fine-grained chemistry NER. In distant supervision, training labels are generated by matching mentions in a document with the concepts in the knowledge bases (KBs). However, this kind of KB-matching suffers from two major challenges: incomplete annotation and noisy annotation. We propose ChemNER, an ontology-guided, distantly-supervised method for fine-grained chemistry NER to tackle these challenges. It leverages the chemistry type ontology structure to generate distant labels with novel methods of flexible KB-matching and ontology-guided multi-type disambiguation. It significantly improves the distant label generation for the subsequent sequence labeling model training. We also provide an expert-labeled, chemistry NER dataset with 62 fine-grained chemistry types (e.g., chemical compounds and chemical reactions). Experimental results show that ChemNER is highly effective, outperforming substantially the state-of-the-art NER methods (with .25 absolute F1 score improvement).
Recent work in multilingual natural language processing has shown progress in various tasks such as natural language inference and joint multilingual translation. Despite success in learning across many languages, challenges arise where multilingual
training regimes often boost performance on some languages at the expense of others. For multilingual named entity recognition (NER) we propose a simple technique that groups similar languages together by using embeddings from a pre-trained masked language model, and automatically discovering language clusters in this embedding space. Specifically, we fine-tune an XLM-Roberta model on a language identification task, and use embeddings from this model for clustering. We conduct experiments on 15 diverse languages in the WikiAnn dataset and show our technique largely outperforms three baselines: (1) training a multilingual model jointly on all available languages, (2) training one monolingual model per language, and (3) grouping languages by linguistic family. We also conduct analyses showing meaningful multilingual transfer for low-resource languages (Swahili and Yoruba), despite being automatically grouped with other seemingly disparate languages.
As a result of unstructured sentences and some misspellings and errors, finding named entities in a noisy environment such as social media takes much more effort. ParsTwiNER contains about 250k tokens, based on standard instructions like MUC-6 or CoN
LL 2003, gathered from Persian Twitter. Using Cohen's Kappa coefficient, the consistency of annotators is 0.95, a high score. In this study, we demonstrate that some state-of-the-art models degrade on these corpora, and trained a new model using parallel transfer learning based on the BERT architecture. Experimental results show that the model works well in informal Persian as well as in formal Persian.
To alleviate label scarcity in Named Entity Recognition (NER) task, distantly supervised NER methods are widely applied to automatically label data and identify entities. Although the human effort is reduced, the generated incomplete and noisy annota
tions pose new challenges for learning effective neural models. In this paper, we propose a novel dictionary extension method which extracts new entities through the type expanded model. Moreover, we design a multi-granularity boundary-aware network which detects entity boundaries from both local and global perspectives. We conduct experiments on different types of datasets, the results show that our model outperforms previous state-of-the-art distantly supervised systems and even surpasses the supervised models.
Nested Named Entity Recognition (NNER) has been extensively studied, aiming to identify all nested entities from potential spans (i.e., one or more continuous tokens). However, recent studies for NNER either focus on tedious tagging schemas or utiliz
e complex structures, which fail to learn effective span representations from the input sentence with highly nested entities. Intuitively, explicit span representations will contribute to NNER due to the rich context information they contain. In this study, we propose a Hierarchical Transformer (HiTRANS) network for the NNER task, which decomposes the input sentence into multi-grained spans and enhances the representation learning in a hierarchical manner. Specifically, we first utilize a two-phase module to generate span representations by aggregating context information based on a bottom-up and top-down transformer network. Then a label prediction layer is designed to recognize nested entities hierarchically, which naturally explores semantic dependencies among different spans. Experiments on GENIA, ACE-2004, ACE-2005 and NNE datasets demonstrate that our proposed method achieves much better performance than the state-of-the-art approaches.
To address a looming crisis of unreproducible evaluation for named entity recognition, we propose guidelines and introduce SeqScore, a software package to improve reproducibility. The guidelines we propose are extremely simple and center around trans
parency regarding how chunks are encoded and scored. We demonstrate that despite the apparent simplicity of NER evaluation, unreported differences in the scoring procedure can result in changes to scores that are both of noticeable magnitude and statistically significant. We describe SeqScore, which addresses many of the issues that cause replication failures.
Cross-domain Named Entity Recognition (NER) transfers the NER knowledge from high-resource domains to the low-resource target domain. Due to limited labeled resources and domain shift, cross-domain NER is a challenging task. To address these challeng
es, we propose a progressive domain adaptation Knowledge Distillation (KD) approach -- PDALN. It achieves superior domain adaptability by employing three components: (1) Adaptive data augmentation techniques, which alleviate cross-domain gap and label sparsity simultaneously; (2) Multi-level Domain invariant features, derived from a multi-grained MMD (Maximum Mean Discrepancy) approach, to enable knowledge transfer across domains; (3) Advanced KD schema, which progressively enables powerful pre-trained language models to perform domain adaptation. Extensive experiments on four benchmarks show that PDALN can effectively adapt high-resource domains to low-resource target domains, even if they are diverse in terms and writing styles. Comparison with other baselines indicates the state-of-the-art performance of PDALN.
Unsupervised consistency training is a way of semi-supervised learning that encourages consistency in model predictions between the original and augmented data. For Named Entity Recognition (NER), existing approaches augment the input sequence with t
oken replacement, assuming annotations on the replaced positions unchanged. In this paper, we explore the use of paraphrasing as a more principled data augmentation scheme for NER unsupervised consistency training. Specifically, we convert Conditional Random Field (CRF) into a multi-label classification module and encourage consistency on the entity appearance between the original and paraphrased sequences. Experiments show that our method is especially effective when annotations are limited.
Named entity disambiguation (NED), which involves mapping textual mentions to structured entities, is particularly challenging in the medical domain due to the presence of rare entities. Existing approaches are limited by the presence of coarse-grain
ed structural resources in biomedical knowledge bases as well as the use of training datasets that provide low coverage over uncommon resources. In this work, we address these issues by proposing a cross-domain data integration method that transfers structural knowledge from a general text knowledge base to the medical domain. We utilize our integration scheme to augment structural resources and generate a large biomedical NED dataset for pretraining. Our pretrained model with injected structural knowledge achieves state-of-the-art performance on two benchmark medical NED datasets: MedMentions and BC5CDR. Furthermore, we improve disambiguation of rare entities by up to 57 accuracy points.
Distantly supervised named entity recognition (DS-NER) efficiently reduces labor costs but meanwhile intrinsically suffers from the label noise due to the strong assumption of distant supervision. Typically, the wrongly labeled instances comprise num
bers of incomplete and inaccurate annotations, while most prior denoising works are only concerned with one kind of noise and fail to fully explore useful information in the training set. To address this issue, we propose a robust learning paradigm named Self-Collaborative Denoising Learning (SCDL), which jointly trains two teacher-student networks in a mutually-beneficial manner to iteratively perform noisy label refinery. Each network is designed to exploit reliable labels via self denoising, and two networks communicate with each other to explore unreliable annotations by collaborative denoising. Extensive experimental results on five real-world datasets demonstrate that SCDL is superior to state-of-the-art DS-NER denoising methods.
