Molecular docking is a hard optimization problem that has been
tackled in the past, demonstrating new and challenging results when
looking for one objective . However, only a few papers can be
found in the literature that deal with this problem by
means of a
multi-objective approach, and no experimental comparisons have
been made in order to clarify which of them has the best overall
performance. In this research, we use and compare, a set of
representative multi-objective optimization algorithms. The
approach followed is focused on optimizing the inter-molecular and
intra-molecular energies as two main objectives to minimize.