ترغب بنشر مسار تعليمي؟ اضغط هنا

Scalable3-BO: Big Data meets HPC - A scalable asynchronous parallel high-dimensional Bayesian optimization framework on supercomputers

290   0   0.0 ( 0 )
 نشر من قبل Anh Tran
 تاريخ النشر 2021
  مجال البحث الهندسة المعلوماتية
والبحث باللغة English
 تأليف Anh Tran




اسأل ChatGPT حول البحث

Bayesian optimization (BO) is a flexible and powerful framework that is suitable for computationally expensive simulation-based applications and guarantees statistical convergence to the global optimum. While remaining as one of the most popular optimization methods, its capability is hindered by the size of data, the dimensionality of the considered problem, and the nature of sequential optimization. These scalability issues are intertwined with each other and must be tackled simultaneously. In this work, we propose the Scalable$^3$-BO framework, which employs sparse GP as the underlying surrogate model to scope with Big Data and is equipped with a random embedding to efficiently optimize high-dimensional problems with low effective dimensionality. The Scalable$^3$-BO framework is further leveraged with asynchronous parallelization feature, which fully exploits the computational resource on HPC within a computational budget. As a result, the proposed Scalable$^3$-BO framework is scalable in three independent perspectives: with respect to data size, dimensionality, and computational resource on HPC. The goal of this work is to push the frontiers of BO beyond its well-known scalability issues and minimize the wall-clock waiting time for optimizing high-dimensional computationally expensive applications. We demonstrate the capability of Scalable$^3$-BO with 1 million data points, 10,000-dimensional problems, with 20 concurrent workers in an HPC environment.



قيم البحث

اقرأ أيضاً

High-fidelity complex engineering simulations are highly predictive, but also computationally expensive and often require substantial computational efforts. The mitigation of computational burden is usually enabled through parallelism in high-perform ance cluster (HPC) architecture. In this paper, an asynchronous constrained batch-parallel Bayesian optimization method is proposed to efficiently solve the computationally-expensive simulation-based optimization problems on the HPC platform, with a budgeted computational resource, where the maximum number of simulations is a constant. The advantages of this method are three-fold. First, the efficiency of the Bayesian optimization is improved, where multiple input locations are evaluated massively parallel in an asynchronous manner to accelerate the optimization convergence with respect to physical runtime. This efficiency feature is further improved so that when each of the inputs is finished, another input is queried without waiting for the whole batch to complete. Second, the method can handle both known and unknown constraints. Third, the proposed method considers several acquisition functions at the same time and sample based on an evolving probability mass distribution function using a modified GP-Hedge scheme, where parameters are corresponding to the performance of each acquisition function. The proposed framework is termed aphBO-2GP-3B, which corresponds to asynchronous parallel hedge Bayesian optimization with two Gaussian processes and three batches. The aphBO-2GP-3B framework is demonstrated using two high-fidelity expensive industrial applications, where the first one is based on finite element analysis (FEA) and the second one is based on computational fluid dynamics (CFD) simulations.
We present Korali, an open-source framework for large-scale Bayesian uncertainty quantification and stochastic optimization. The framework relies on non-intrusive sampling of complex multiphysics models and enables their exploitation for optimization and decision-making. In addition, its distributed sampling engine makes efficient use of massively-parallel architectures while introducing novel fault tolerance and load balancing mechanisms. We demonstrate these features by interfacing Korali with existing high-performance software such as Aphros, Lammps (CPU-based), and Mirheo (GPU-based) and show efficient scaling for up to 512 nodes of the CSCS Piz Daint supercomputer. Finally, we present benchmarks demonstrating that Korali outperforms related state-of-the-art software frameworks.
187 - Jason Dai , Yiheng Wang , Xin Qiu 2018
This paper presents BigDL (a distributed deep learning framework for Apache Spark), which has been used by a variety of users in the industry for building deep learning applications on production big data platforms. It allows deep learning applicatio ns to run on the Apache Hadoop/Spark cluster so as to directly process the production data, and as a part of the end-to-end data analysis pipeline for deployment and management. Unlike existing deep learning frameworks, BigDL implements distributed, data parallel training directly on top of the functional compute model (with copy-on-write and coarse-grained operations) of Spark. We also share real-world experience and war stories of users that have adopted BigDL to address their challenges(i.e., how to easily build end-to-end data analysis and deep learning pipelines for their production data).
The FFT of three-dimensional (3D) input data is an important computational kernel of numerical simulations and is widely used in High Performance Computing (HPC) codes running on a large number of processors. Performance of many scientific applicatio ns such as Molecular Dynamic simulations depends on the underlying 3D parallel FFT library being used. In this paper, we present C-DACs three-dimensional Fast Fourier Transform (CROFT) library which implements three-dimensional parallel FFT using pencil decomposition. To exploit the hyperthreading capabilities of processor cores without affecting performance, CROFT is designed to use multithreading along with MPI. CROFT implementation has an innovative feature of overlapping compute and memory-I/O with MPI communication using multithreading. As opposed to other 3D FFT implementations, CROFT uses only two threads where one thread is dedicated for communication so that it can be effectively overlapped with computations. Thus, depending on the number of processes used, CROFT achieves performance improvement of about 51% to 42% as compared to FFTW3 library.
Given a similarity graph between items, correlation clustering (CC) groups similar items together and dissimilar ones apart. One of the most popular CC algorithms is KwikCluster: an algorithm that serially clusters neighborhoods of vertices, and obta ins a 3-approximation ratio. Unfortunately, KwikCluster in practice requires a large number of clustering rounds, a potential bottleneck for large graphs. We present C4 and ClusterWild!, two algorithms for parallel correlation clustering that run in a polylogarithmic number of rounds and achieve nearly linear speedups, provably. C4 uses concurrency control to enforce serializability of a parallel clustering process, and guarantees a 3-approximation ratio. ClusterWild! is a coordination free algorithm that abandons consistency for the benefit of better scaling; this leads to a provably small loss in the 3-approximation ratio. We provide extensive experimental results for both algorithms, where we outperform the state of the art, both in terms of clustering accuracy and running time. We show that our algorithms can cluster billion-edge graphs in under 5 seconds on 32 cores, while achieving a 15x speedup.

الأسئلة المقترحة

التعليقات
جاري جلب التعليقات جاري جلب التعليقات
سجل دخول لتتمكن من متابعة معايير البحث التي قمت باختيارها
mircosoft-partner

هل ترغب بارسال اشعارات عن اخر التحديثات في شمرا-اكاديميا