ترغب بنشر مسار تعليمي؟ اضغط هنا

Knowledge-based Analysis for Mortality Prediction from CT Images

97   0   0.0 ( 0 )
 نشر من قبل Hengtao Guo
 تاريخ النشر 2019
  مجال البحث الهندسة المعلوماتية
والبحث باللغة English




اسأل ChatGPT حول البحث

Recent studies have highlighted the high correlation between cardiovascular diseases (CVD) and lung cancer, and both are associated with significant morbidity and mortality. Low-Dose CT (LCDT) scans have led to significant improvements in the accuracy of lung cancer diagnosis and thus the reduction of cancer deaths. However, the high correlation between lung cancer and CVD has not been well explored for mortality prediction. This paper introduces a knowledge-based analytical method using deep convolutional neural network (CNN) for all-cause mortality prediction. The underlying approach combines structural image features extracted from CNNs, based on LDCT volume in different scale, and clinical knowledge obtained from quantitative measurements, to comprehensively predict the mortality risk of lung cancer screening subjects. The introduced method is referred to here as the Knowledge-based Analysis of Mortality Prediction Network, or KAMP-Net. It constitutes a collaborative framework that utilizes both imaging features and anatomical information, instead of completely relying on automatic feature extraction. Our work demonstrates the feasibility of incorporating quantitative clinical measurements to assist CNNs in all-cause mortality prediction from chest LDCT images. The results of this study confirm that radiologist defined features are an important complement to CNNs to achieve a more comprehensive feature extraction. Thus, the proposed KAMP-Net has shown to achieve a superior performance when compared to other methods. Our code is available at https://github.com/DIAL-RPI/KAMP-Net.



قيم البحث

اقرأ أيضاً

State-of-the-art approaches to infer dense depth measurements from images rely on CNNs trained end-to-end on a vast amount of data. However, these approaches suffer a drastic drop in accuracy when dealing with environments much different in appearanc e and/or context from those observed at training time. This domain shift issue is usually addressed by fine-tuning on smaller sets of images from the target domain annotated with depth labels. Unfortunately, relying on such supervised labeling is seldom feasible in most practical settings. Therefore, we propose an unsupervised domain adaptation technique which does not require groundtruth labels. Our method relies only on image pairs and leverages on classical stereo algorithms to produce disparity measurements alongside with confidence estimators to assess upon their reliability. We propose to fine-tune both depth-from-stereo as well as depth-from-mono architectures by a novel confidence-guided loss function that handles the measured disparities as noisy labels weighted according to the estimated confidence. Extensive experimental results based on standard datasets and evaluation protocols prove that our technique can address effectively the domain shift issue with both stereo and monocular depth prediction architectures and outperforms other state-of-the-art unsupervised loss functions that may be alternatively deployed to pursue domain adaptation.
Many in-hospital mortality risk prediction scores dichotomize predictive variables to simplify the score calculation. However, hard thresholding in these additive stepwise scores of the form add x points if variable v is above/below threshold t may l ead to critical failures. In this paper, we seek to develop risk prediction scores that preserve clinical knowledge embedded in features and structure of the existing additive stepwise scores while addressing limitations caused by variable dichotomization. To this end, we propose a novel score structure that relies on a transformation of predictive variables by means of nonlinear logistic functions facilitating smooth differentiation between critical and normal values of the variables. We develop an optimization framework for inferring parameters of the logistic functions for a given patient population via cyclic block coordinate descent. The parameters may readily be updated as the patient population and standards of care evolve. We tested the proposed methodology on two populations: (1) brain trauma patients admitted to the intensive care unit of the Dell Childrens Medical Center of Central Texas between 2007 and 2012, and (2) adult ICU patient data from the MIMIC II database. The results are compared with those obtained by the widely used PRISM III and SOFA scores. The prediction power of a score is evaluated using area under ROC curve, Youdens index, and precision-recall balance in a cross-validation study. The results demonstrate that the new framework enables significant performance improvements over PRISM III and SOFA in terms of all three criteria.
In this work, we consider transferring the structure information from large networks to compact ones for dense prediction tasks in computer vision. Previous knowledge distillation strategies used for dense prediction tasks often directly borrow the d istillation scheme for image classification and perform knowledge distillation for each pixel separately, leading to sub-optimal performance. Here we propose to distill structured knowledge from large networks to compact networks, taking into account the fact that dense prediction is a structured prediction problem. Specifically, we study two structured distillation schemes: i) pair-wise distillation that distills the pair-wise similarities by building a static graph; and ii) holistic distillation that uses adversarial training to distill holistic knowledge. The effectiveness of our knowledge distillation approaches is demonstrated by experiments on three dense prediction tasks: semantic segmentation, depth estimation and object detection. Code is available at: https://git.io/StructKD
Acute aortic syndrome (AAS) is a group of life threatening conditions of the aorta. We have developed an end-to-end automatic approach to detect AAS in computed tomography (CT) images. Our approach consists of two steps. At first, we extract N cross sections along the segmented aorta centerline for each CT scan. These cross sections are stacked together to form a new volume which is then classified using two different classifiers, a 3D convolutional neural network (3D CNN) and a multiple instance learning (MIL). We trained, validated, and compared two models on 2291 contrast CT volumes. We tested on a set aside cohort of 230 normal and 50 positive CT volumes. Our models detected AAS with an Area under Receiver Operating Characteristic curve (AUC) of 0.965 and 0.985 using 3DCNN and MIL, respectively.
Purpose: To use and test a labelling algorithm that operates on two-dimensional (2D) reformations, rather than three-dimensional (3D) data to locate and identify vertebrae. Methods: We improved the Btrfly Net (described by Sekuboyina et al) that wo rks on sagittal and coronal maximum intensity projections (MIP) and augmented it with two additional components: spine-localization and adversarial a priori-learning. Furthermore, we explored two variants of adversarial training schemes that incorporated the anatomical a priori knowledge into the Btrfly Net. We investigated the superiority of the proposed approach for labelling vertebrae on three datasets: a public benchmarking dataset of 302 CT scans and two in-house datasets with a total of 238 CT scans. We employed Wilcoxon signed-rank test to compute the statistical significance of the improvement in performance observed due to various architectural components in our approach. Results: On the public dataset, our approach using the described Btrfly(pe-eb) network performed on par with current state-of-the-art methods achieving a statistically significant (p < .001) vertebrae identification rate of 88.5+/-0.2 % and localization distances of less than 7-mm. On the in-house datasets that had a higher inter-scan data variability, we obtained an identification rate of 85.1+/-1.2%. Conclusion: An identification performance comparable to existing 3D approaches was achieved when labelling vertebrae on 2D MIPs. The performance was further improved using the proposed adversarial training regime that effectively enforced local spine a priori knowledge during training. Lastly, spine-localization increased the generalizability of our approach by homogenizing the content in the MIPs.
التعليقات
جاري جلب التعليقات جاري جلب التعليقات
سجل دخول لتتمكن من متابعة معايير البحث التي قمت باختيارها
mircosoft-partner

هل ترغب بارسال اشعارات عن اخر التحديثات في شمرا-اكاديميا