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FedGraphNN: A Federated Learning System and Benchmark for Graph Neural Networks

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 نشر من قبل Chaoyang He
 تاريخ النشر 2021
  مجال البحث الهندسة المعلوماتية
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Graph Neural Networks (GNNs) are the first choice methods for graph machine learning problems thanks to their ability to learn state-of-the-art level representations from graph-structured data. However, centralizing a massive amount of real-world gra ph data for GNN training is prohibitive due to user-side privacy concerns, regulation restrictions, and commercial competition. Federated Learning is the de-facto standard for collaborative training of machine learning models over many distributed edge devices without the need for centralization. Nevertheless, training graph neural networks in a federated setting is vaguely defined and brings statistical and systems challenges. This work proposes SpreadGNN, a novel multi-task federated training framework capable of operating in the presence of partial labels and absence of a central server for the first time in the literature. SpreadGNN extends federated multi-task learning to realistic serverless settings for GNNs, and utilizes a novel optimization algorithm with a convergence guarantee, Decentralized Periodic Averaging SGD (DPA-SGD), to solve decentralized multi-task learning problems. We empirically demonstrate the efficacy of our framework on a variety of non-I.I.D. distributed graph-level molecular property prediction datasets with partial labels. Our results show that SpreadGNN outperforms GNN models trained over a central server-dependent federated learning system, even in constrained topologies. The source code is publicly available at https://github.com/FedML-AI/SpreadGNN
Training deep graph neural networks (GNNs) is notoriously hard. Besides the standard plights in training deep architectures such as vanishing gradients and overfitting, the training of deep GNNs also uniquely suffers from over-smoothing, information squashing, and so on, which limits their potential power on large-scale graphs. Although numerous efforts are proposed to address these limitations, such as various forms of skip connections, graph normalization, and random dropping, it is difficult to disentangle the advantages brought by a deep GNN architecture from those tricks necessary to train such an architecture. Moreover, the lack of a standardized benchmark with fair and consistent experimental settings poses an almost insurmountable obstacle to gauging the effectiveness of new mechanisms. In view of those, we present the first fair and reproducible benchmark dedicated to assessing the tricks of training deep GNNs. We categorize existing approaches, investigate their hyperparameter sensitivity, and unify the basic configuration. Comprehensive evaluations are then conducted on tens of representative graph datasets including the recent large-scale Open Graph Benchmark (OGB), with diverse deep GNN backbones. Based on synergistic studies, we discover the combo of superior training tricks, that lead us to attain the new state-of-the-art results for deep GCNs, across multiple representative graph datasets. We demonstrate that an organic combo of initial connection, identity mapping, group and batch normalization has the most ideal performance on large datasets. Experiments also reveal a number of surprises when combining or scaling up some of the tricks. All codes are available at https://github.com/VITA-Group/Deep_GCN_Benchmarking.
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Federated learning has emerged as an important paradigm for training machine learning models in different domains. For graph-level tasks such as graph classification, graphs can also be regarded as a special type of data samples, which can be collect ed and stored in separate local systems. Similar to other domains, multiple local systems, each holding a small set of graphs, may benefit from collaboratively training a powerful graph mining model, such as the popular graph neural networks (GNNs). To provide more motivation towards such endeavors, we analyze real-world graphs from different domains to confirm that they indeed share certain graph properties that are statistically significant compared with random graphs. However, we also find that different sets of graphs, even from the same domain or same dataset, are non-IID regarding both graph structures and node features. To handle this, we propose a graph clustered federated learning (GCFL) framework that dynamically finds clusters of local systems based on the gradients of GNNs, and theoretically justify that such clusters can reduce the structure and feature heterogeneity among graphs owned by the local systems. Moreover, we observe the gradients of GNNs to be rather fluctuating in GCFL which impedes high-quality clustering, and design a gradient sequence-based clustering mechanism based on dynamic time warping (GCFL+). Extensive experimental results and in-depth analysis demonstrate the effectiveness of our proposed frameworks.

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