اشترك بالحزمة الذهبية واحصل على وصول غير محدود شمرا أكاديميا
تسجيل مستخدم جديدConstructing Artificial Data for Fine-tuning for Low-Resource Biomedical Text Tagging with Applications in PICO Annotation
321
0
0.0
(
0
)
اسأل ChatGPT حول البحث
ﻻ يوجد ملخص باللغة العربية
Biomedical text tagging systems are plagued by the dearth of labeled training data. There have been recent attempts at using pre-trained encoders to deal with this issue. Pre-trained encoder provides representation of the input text which is then fed to task-specific layers for classification. The entire network is fine-tuned on the labeled data from the target task. Unfortunately, a low-resource biomedical task often has too few labeled instances for satisfactory fine-tuning. Also, if the label space is large, it contains few or no labeled instances for majority of the labels. Most biomedical tagging systems treat labels as indexes, ignoring the fact that these labels are often concepts expressed in natural language e.g. `Appearance of lesion on brain imaging. To address these issues, we propose constructing extra labeled instances using label-text (i.e. labels name) as input for the corresponding label-index (i.e. labels index). In fact, we propose a number of strategies for manufacturing multiple artificial labeled instances from a single label. The network is then fine-tuned on a combination of real and these newly constructed artificial labeled instances. We evaluate the proposed approach on an important low-resource biomedical task called textit{PICO annotation}, which requires tagging raw text describing clinical trials with labels corresponding to different aspects of the trial i.e. PICO (Population, Intervention/Control, Outcome) characteristics of the trial. Our empirical results show that the proposed method achieves a new state-of-the-art performance for PICO annotation with very significant improvements over competitive baselines.
قيم البحث
اقرأ أيضاً
The massive growth of digital biomedical data is making biomedical text indexing and classification increasingly important. Accordingly, previous research has devised numerous deep learning techniques focused on using feedforward, convolutional or re
current neural architectures. More recently, fine-tuned transformers-based pretrained models (PTMs) have demonstrated superior performance compared to such models in many natural language processing tasks. However, the direct use of PTMs in the biomedical domain is only limited to the target documents, ignoring the rich semantic information in the label descriptions. In this paper, we develop an improved label attention-based architecture to inject semantic label description into the fine-tuning process of PTMs. Results on two public medical datasets show that the proposed fine-tuning scheme outperforms the conventionally fine-tuned PTMs and prior state-of-the-art models. Furthermore, we show that fine-tuning with the label attention mechanism is interpretable in the interpretability study.
Inductive transfer learning has greatly impacted computer vision, but existing approaches in NLP still require task-specific modifications and training from scratch. We propose Universal Language Model Fine-tuning (ULMFiT), an effective transfer lear
ning method that can be applied to any task in NLP, and introduce techniques that are key for fine-tuning a language model. Our method significantly outperforms the state-of-the-art on six text classification tasks, reducing the error by 18-24% on the majority of datasets. Furthermore, with only 100 labeled examples, it matches the performance of training from scratch on 100x more data. We open-source our pretrained models and code.
Fine-tuning is known to improve NLP models by adapting an initial model trained on more plentiful but less domain-salient examples to data in a target domain. Such domain adaptation is typically done using one stage of fine-tuning. We demonstrate tha
t gradually fine-tuning in a multi-stage process can yield substantial further gains and can be applied without modifying the model or learning objective.
While large-scale pretrained language models have obtained impressive results when fine-tuned on a wide variety of tasks, they still often suffer from overfitting in low-resource scenarios. Since such models are general-purpose feature extractors, ma
ny of these features are inevitably irrelevant for a given target task. We propose to use Variational Information Bottleneck (VIB) to suppress irrelevant features when fine-tuning on low-resource target tasks, and show that our method successfully reduces overfitting. Moreover, we show that our VIB model finds sentence representations that are more robust to biases in natural language inference datasets, and thereby obtains better generalization to out-of-domain datasets. Evaluation on seven low-resource datasets in different tasks shows that our method significantly improves transfer learning in low-resource scenarios, surpassing prior work. Moreover, it improves generalization on 13 out of 15 out-of-domain natural language inference benchmarks. Our code is publicly available in https://github.com/rabeehk/vibert.
Data augmentation techniques have been widely used to improve machine learning performance as they enhance the generalization capability of models. In this work, to generate high quality synthetic data for low-resource tagging tasks, we propose a nov
el augmentation method with language models trained on the linearized labeled sentences. Our method is applicable to both supervised and semi-supervised settings. For the supervised settings, we conduct extensive experiments on named entity recognition (NER), part of speech (POS) tagging and end-to-end target based sentiment analysis (E2E-TBSA) tasks. For the semi-supervised settings, we evaluate our method on the NER task under the conditions of given unlabeled data only and unlabeled data plus a knowledge base. The results show that our method can consistently outperform the baselines, particularly when the given gold training data are less.
الأسئلة المقترحة
سجل دخول لتتمكن من نشر تعليقات
التعليقات
جاري جلب التعليقات
سجل دخول لتتمكن من متابعة معايير البحث التي قمت باختيارها
