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In 2009, Jonoska, Seeman and Wu showed that every graph admits a route for a DNA reporter strand, that is, a closed walk covering every edge either once or twice, in opposite directions if twice, and passing through each vertex in a particular way. This corresponds to showing that every graph has an emph{edge-outer embedding}, that is, an orientable embedding with some face that is incident with every edge. In the motivating application, the objective is such a closed walk of minimum length. Here we give a short algorithmic proof of the original existence result, and also prove that finding a shortest length solution is NP-hard, even for $3$-connected cubic ($3$-regular) planar graphs. Independent of the motivating application, this problem opens a new direction in the study of graph embeddings, and we suggest new problems emerging from it.
Building a structure using self-assembly of DNA molecules by origami folding requires finding a route for the scaffolding strand through the desired structure. When the target structure is a 1-complex (or the geometric realization of a graph), an opt
We propose a class of two person perfect information games based on weighted graphs. One of these games can be described in terms of a round pizza which is cut radially into pieces of varying size. The two players alternately take pieces subject to t
Let $G$ be a graph such that each edge has its list of available colors, and assume that each list is a subset of the common set consisting of $k$ colors. Suppose that we are given two list edge-colorings $f_0$ and $f_r$ of $G$, and asked whether the
Let $X=(V,E)$ be a finite simple connected graph with $n$ vertices and $m$ edges. A configuration is an assignment of one of two colors, black or white, to each edge of $X.$ A move applied to a configuration is to select a black edge $epsilonin E$ an
We propose novel chemical reaction networks to translate levels of concentration into unique DNA strand species, which we call concentration translators. Our design of the concentration translators is based on combination of two chemical reaction net