Entity representations are useful in natural language tasks involving entities. In this paper, we propose new pretrained contextualized representations of words and entities based on the bidirectional transformer. The proposed model treats words and
entities in a given text as independent tokens, and outputs contextualized representations of them. Our model is trained using a new pretraining task based on the masked language model of BERT. The task involves predicting randomly masked words and entities in a large entity-annotated corpus retrieved from Wikipedia. We also propose an entity-aware self-attention mechanism that is an extension of the self-attention mechanism of the transformer, and considers the types of tokens (words or entities) when computing attention scores. The proposed model achieves impressive empirical performance on a wide range of entity-related tasks. In particular, it obtains state-of-the-art results on five well-known datasets: Open Entity (entity typing), TACRED (relation classification), CoNLL-2003 (named entity recognition), ReCoRD (cloze-style question answering), and SQuAD 1.1 (extractive question answering). Our source code and pretrained representations are available at https://github.com/studio-ousia/luke.
This study proposes a Neural Attentive Bag-of-Entities model, which is a neural network model that performs text classification using entities in a knowledge base. Entities provide unambiguous and relevant semantic signals that are beneficial for cap
turing semantics in texts. We combine simple high-recall entity detection based on a dictionary, to detect entities in a document, with a novel neural attention mechanism that enables the model to focus on a small number of unambiguous and relevant entities. We tested the effectiveness of our model using two standard text classification datasets (i.e., the 20 Newsgroups and R8 datasets) and a popular factoid question answering dataset based on a trivia quiz game. As a result, our model achieved state-of-the-art results on all datasets. The source code of the proposed model is available online at https://github.com/wikipedia2vec/wikipedia2vec.
We propose a new global entity disambiguation (ED) model based on contextualized embeddings of words and entities. Our model is based on a bidirectional transformer encoder (i.e., BERT) and produces contextualized embeddings for words and entities in
the input text. The model is trained using a new masked entity prediction task that aims to train the model by predicting randomly masked entities in entity-annotated texts obtained from Wikipedia. We further extend the model by solving ED as a sequential decision task to capture global contextual information. We evaluate our model using six standard ED datasets and achieve new state-of-the-art results on all but one dataset.
Molecule property prediction is a fundamental problem for computer-aided drug discovery and materials science. Quantum-chemical simulations such as density functional theory (DFT) have been widely used for calculating the molecule properties, however
, because of the heavy computational cost, it is difficult to search a huge number of potential chemical compounds. Machine learning methods for molecular modeling are attractive alternatives, however, the development of expressive, accurate, and scalable graph neural networks for learning molecular representations is still challenging. In this work, we propose a simple and powerful graph neural networks for molecular property prediction. We model a molecular as a directed complete graph in which each atom has a spatial position, and introduce a recursive neural network with simple gating function. We also feed input embeddings for every layers as skip connections to accelerate the training. Experimental results show that our model achieves the state-of-the-art performance on the standard benchmark dataset for molecular property prediction.
Biomedical Named Entity Recognition (BioNER) is a crucial step for analyzing Biomedical texts, which aims at extracting biomedical named entities from a given text. Different supervised machine learning algorithms have been applied for BioNER by vari
ous researchers. The main requirement of these approaches is an annotated dataset used for learning the parameters of machine learning algorithms. Segment Representation (SR) models comprise of different tag sets used for representing the annotated data, such as IOB2, IOE2 and IOBES. In this paper, we propose an extension of IOBES model to improve the performance of BioNER. The proposed SR model, FROBES, improves the representation of multi-word entities. We used Bidirectional Long Short-Term Memory (BiLSTM) network; an instance of Recurrent Neural Networks (RNN), to design a baseline system for BioNER and evaluated the new SR model on two datasets, i2b2/VA 2010 challenge dataset and JNLPBA 2004 shared task dataset. The proposed SR model outperforms other models for multi-word entities with length greater than two. Further, the outputs of different SR models have been combined using majority voting ensemble method which outperforms the baseline models performance.
Understanding procedural text requires tracking entities, actions and effects as the narrative unfolds. We focus on the challenging real-world problem of action-graph extraction from material science papers, where language is highly specialized and d
ata annotation is expensive and scarce. We propose a novel approach, Text2Quest, where procedural text is interpreted as instructions for an interactive game. A learning agent completes the game by executing the procedure correctly in a text-based simulated lab environment. The framework can complement existing approaches and enables richer forms of learning compared to static texts. We discuss potential limitations and advantages of the approach, and release a prototype proof-of-concept, hoping to encourage research in this direction.
We present a simple and accurate span-based model for semantic role labeling (SRL). Our model directly takes into account all possible argument spans and scores them for each label. At decoding time, we greedily select higher scoring labeled spans. O
ne advantage of our model is to allow us to design and use span-level features, that are difficult to use in token-based BIO tagging approaches. Experimental results demonstrate that our ensemble model achieves the state-of-the-art results, 87.4 F1 and 87.0 F1 on the CoNLL-2005 and 2012 datasets, respectively.
In this paper, we describe TextEnt, a neural network model that learns distributed representations of entities and documents directly from a knowledge base (KB). Given a document in a KB consisting of words and entity annotations, we train our model
to predict the entity that the document describes and map the document and its target entity close to each other in a continuous vector space. Our model is trained using a large number of documents extracted from Wikipedia. The performance of the proposed model is evaluated using two tasks, namely fine-grained entity typing and multiclass text classification. The results demonstrate that our model achieves state-of-the-art performance on both tasks. The code and the trained representations are made available online for further academic research.
In this chapter, we describe our question answering system, which was the winning system at the Human-Computer Question Answering (HCQA) Competition at the Thirty-first Annual Conference on Neural Information Processing Systems (NIPS). The competitio
n requires participants to address a factoid question answering task referred to as quiz bowl. To address this task, we use two novel neural network models and combine these models with conventional information retrieval models using a supervised machine learning model. Our system achieved the best performance among the systems submitted in the competition and won a match against six top human quiz experts by a wide margin.
We describe a neural network model that jointly learns distributed representations of texts and knowledge base (KB) entities. Given a text in the KB, we train our proposed model to predict entities that are relevant to the text. Our model is designed
to be generic with the ability to address various NLP tasks with ease. We train the model using a large corpus of texts and their entity annotations extracted from Wikipedia. We evaluated the model on three important NLP tasks (i.e., sentence textual similarity, entity linking, and factoid question answering) involving both unsupervised and supervised settings. As a result, we achieved state-of-the-art results on all three of these tasks. Our code and trained models are publicly available for further academic research.
