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Register a new userLeveraging Domain Agnostic and Specific Knowledge for Acronym Disambiguation
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Danqing Zhu
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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An obstacle to scientific document understanding is the extensive use of acronyms which are shortened forms of long technical phrases. Acronym disambiguation aims to find the correct meaning of an ambiguous acronym in a given text. Recent efforts attempted to incorporate word embeddings and deep learning architectures, and achieved significant effects in this task. In general domains, kinds of fine-grained pretrained language models have sprung up, thanks to the largescale corpora which can usually be obtained through crowdsourcing. However, these models based on domain agnostic knowledge might achieve insufficient performance when directly applied to the scientific domain. Moreover, obtaining large-scale high-quality annotated data and representing high-level semantics in the scientific domain is challenging and expensive. In this paper, we consider both the domain agnostic and specific knowledge, and propose a Hierarchical Dual-path BERT method coined hdBERT to capture the general fine-grained and high-level specific representations for acronym disambiguation. First, the context-based pretrained models, RoBERTa and SciBERT, are elaborately involved in encoding these two kinds of knowledge respectively. Second, multiple layer perceptron is devised to integrate the dualpath representations simultaneously and outputs the prediction. With a widely adopted SciAD dataset contained 62,441 sentences, we investigate the effectiveness of hdBERT. The experimental results exhibit that the proposed approach outperforms state-of-the-art methods among various evaluation metrics. Specifically, its macro F1 achieves 93.73%.
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The prevalence of ambiguous acronyms make scientific documents harder to understand for humans and machines alike, presenting a need for models that can automatically identify acronyms in text and disambiguate their meaning. We introduce new methods for acronym identification and disambiguation: our acronym identification model projects learned token embeddings onto tag predictions, and our acronym disambiguation model finds training examples with similar sentence embeddings as test examples. Both of our systems achieve significant performance gains over previously suggested methods, and perform competitively on the SDU@AAAI-21 shared task leaderboard. Our models were trained in part on new distantly-supervised datasets for these tasks which we call AuxAI and AuxAD. We also identified a duplication conflict issue in the SciAD dataset, and formed a deduplicated version of SciAD that we call SciAD-dedupe. We publicly released all three of these datasets, and hope that they help the community make further strides in scientific document understanding.
Acronyms are the short forms of phrases that facilitate conveying lengthy sentences in documents and serve as one of the mainstays of writing. Due to their importance, identifying acronyms and corresponding phrases (i.e., acronym identification (AI)) and finding the correct meaning of each acronym (i.e., acronym disambiguation (AD)) are crucial for text understanding. Despite the recent progress on this task, there are some limitations in the existing datasets which hinder further improvement. More specifically, limited size of manually annotated AI datasets or noises in the automatically created acronym identification datasets obstruct designing advanced high-performing acronym identification models. Moreover, the existing datasets are mostly limited to the medical domain and ignore other domains. In order to address these two limitations, we first create a manually annotated large AI dataset for scientific domain. This dataset contains 17,506 sentences which is substantially larger than previous scientific AI datasets. Next, we prepare an AD dataset for scientific domain with 62,441 samples which is significantly larger than the previous scientific AD dataset. Our experiments show that the existing state-of-the-art models fall far behind human-level performance on both datasets proposed by this work. In addition, we propose a new deep learning model that utilizes the syntactical structure of the sentence to expand an ambiguous acronym in a sentence. The proposed model outperforms the state-of-the-art models on the new AD dataset, providing a strong baseline for future research on this dataset.
Traditional Reinforcement Learning (RL) problems depend on an exhaustive simulation environment that models real-world physics of the problem and trains the RL agent by observing this environment. In this paper, we present a novel approach to creating an environment by modeling the reward function based on empirical rules extracted from human domain knowledge of the system under study. Using this empirical rewards function, we will build an environment and train the agent. We will first create an environment that emulates the effect of setting cabin temperature through thermostat. This is typically done in RL problems by creating an exhaustive model of the system with detailed thermodynamic study. Instead, we propose an empirical approach to model the reward function based on human domain knowledge. We will document some rules of thumb that we usually exercise as humans while setting thermostat temperature and try and model these into our reward function. This modeling of empirical human domain rules into a reward function for RL is the unique aspect of this paper. This is a continuous action space problem and using deep deterministic policy gradient (DDPG) method, we will solve for maximizing the reward function. We will create a policy network that predicts optimal temperature setpoint given external temperature and humidity.
Acronyms and abbreviations are the short-form of longer phrases and they are ubiquitously employed in various types of writing. Despite their usefulness to save space in writing and readers time in reading, they also provide challenges for understanding the text especially if the acronym is not defined in the text or if it is used far from its definition in long texts. To alleviate this issue, there are considerable efforts both from the research community and software developers to build systems for identifying acronyms and finding their correct meanings in the text. However, none of the existing works provide a unified solution capable of processing acronyms in various domains and to be publicly available. Thus, we provide the first web-based acronym identification and disambiguation system which can process acronyms from various domains including scientific, biomedical, and general domains. The web-based system is publicly available at http://iq.cs.uoregon.edu:5000 and a demo video is available at https://youtu.be/IkSh7LqI42M. The system source code is also available at https://github.com/amirveyseh/MadDog.
Entity linking - connecting entity mentions in a natural language utterance to knowledge graph (KG) entities is a crucial step for question answering over KGs. It is often based on measuring the string similarity between the entity label and its mention in the question. The relation referred to in the question can help to disambiguate between entities with the same label. This can be misleading if an incorrect relation has been identified in the relation linking step. However, an incorrect relation may still be semantically similar to the relation in which the correct entity forms a triple within the KG; which could be captured by the similarity of their KG embeddings. Based on this idea, we propose the first end-to-end neural network approach that employs KG as well as word embeddings to perform joint relation and entity classification of simple questions while implicitly performing entity disambiguation with the help of a novel gating mechanism. An empirical evaluation shows that the proposed approach achieves a performance comparable to state-of-the-art entity linking while requiring less post-processing.
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