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Register a new userPrimer AIs Systems for Acronym Identification and Disambiguation
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Nicholas Egan
Publication date
2020
fields
Informatics Engineering
and research's language is
English
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The prevalence of ambiguous acronyms make scientific documents harder to understand for humans and machines alike, presenting a need for models that can automatically identify acronyms in text and disambiguate their meaning. We introduce new methods for acronym identification and disambiguation: our acronym identification model projects learned token embeddings onto tag predictions, and our acronym disambiguation model finds training examples with similar sentence embeddings as test examples. Both of our systems achieve significant performance gains over previously suggested methods, and perform competitively on the SDU@AAAI-21 shared task leaderboard. Our models were trained in part on new distantly-supervised datasets for these tasks which we call AuxAI and AuxAD. We also identified a duplication conflict issue in the SciAD dataset, and formed a deduplicated version of SciAD that we call SciAD-dedupe. We publicly released all three of these datasets, and hope that they help the community make further strides in scientific document understanding.
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Acronyms are the short forms of phrases that facilitate conveying lengthy sentences in documents and serve as one of the mainstays of writing. Due to their importance, identifying acronyms and corresponding phrases (i.e., acronym identification (AI)) and finding the correct meaning of each acronym (i.e., acronym disambiguation (AD)) are crucial for text understanding. Despite the recent progress on this task, there are some limitations in the existing datasets which hinder further improvement. More specifically, limited size of manually annotated AI datasets or noises in the automatically created acronym identification datasets obstruct designing advanced high-performing acronym identification models. Moreover, the existing datasets are mostly limited to the medical domain and ignore other domains. In order to address these two limitations, we first create a manually annotated large AI dataset for scientific domain. This dataset contains 17,506 sentences which is substantially larger than previous scientific AI datasets. Next, we prepare an AD dataset for scientific domain with 62,441 samples which is significantly larger than the previous scientific AD dataset. Our experiments show that the existing state-of-the-art models fall far behind human-level performance on both datasets proposed by this work. In addition, we propose a new deep learning model that utilizes the syntactical structure of the sentence to expand an ambiguous acronym in a sentence. The proposed model outperforms the state-of-the-art models on the new AD dataset, providing a strong baseline for future research on this dataset.
Acronyms and abbreviations are the short-form of longer phrases and they are ubiquitously employed in various types of writing. Despite their usefulness to save space in writing and readers time in reading, they also provide challenges for understanding the text especially if the acronym is not defined in the text or if it is used far from its definition in long texts. To alleviate this issue, there are considerable efforts both from the research community and software developers to build systems for identifying acronyms and finding their correct meanings in the text. However, none of the existing works provide a unified solution capable of processing acronyms in various domains and to be publicly available. Thus, we provide the first web-based acronym identification and disambiguation system which can process acronyms from various domains including scientific, biomedical, and general domains. The web-based system is publicly available at http://iq.cs.uoregon.edu:5000 and a demo video is available at https://youtu.be/IkSh7LqI42M. The system source code is also available at https://github.com/amirveyseh/MadDog.
An obstacle to scientific document understanding is the extensive use of acronyms which are shortened forms of long technical phrases. Acronym disambiguation aims to find the correct meaning of an ambiguous acronym in a given text. Recent efforts attempted to incorporate word embeddings and deep learning architectures, and achieved significant effects in this task. In general domains, kinds of fine-grained pretrained language models have sprung up, thanks to the largescale corpora which can usually be obtained through crowdsourcing. However, these models based on domain agnostic knowledge might achieve insufficient performance when directly applied to the scientific domain. Moreover, obtaining large-scale high-quality annotated data and representing high-level semantics in the scientific domain is challenging and expensive. In this paper, we consider both the domain agnostic and specific knowledge, and propose a Hierarchical Dual-path BERT method coined hdBERT to capture the general fine-grained and high-level specific representations for acronym disambiguation. First, the context-based pretrained models, RoBERTa and SciBERT, are elaborately involved in encoding these two kinds of knowledge respectively. Second, multiple layer perceptron is devised to integrate the dualpath representations simultaneously and outputs the prediction. With a widely adopted SciAD dataset contained 62,441 sentences, we investigate the effectiveness of hdBERT. The experimental results exhibit that the proposed approach outperforms state-of-the-art methods among various evaluation metrics. Specifically, its macro F1 achieves 93.73%.
Acronym identification focuses on finding the acronyms and the phrases that have been abbreviated, which is crucial for scientific document understanding tasks. However, the limited size of manually annotated datasets hinders further improvement for the problem. Recent breakthroughs of language models pre-trained on large corpora clearly show that unsupervised pre-training can vastly improve the performance of downstream tasks. In this paper, we present an Adversarial Training BERT method named AT-BERT, our winning solution to acronym identification task for Scientific Document Understanding (SDU) Challenge of AAAI 2021. Specifically, the pre-trained BERT is adopted to capture better semantic representation. Then we incorporate the FGM adversarial training strategy into the fine-tuning of BERT, which makes the model more robust and generalized. Furthermore, an ensemble mechanism is devised to involve the representations learned from multiple BERT variants. Assembling all these components together, the experimental results on the SciAI dataset show that our proposed approach outperforms all other competitive state-of-the-art methods.
We propose a new global entity disambiguation (ED) model based on contextualized embeddings of words and entities. Our model is based on a bidirectional transformer encoder (i.e., BERT) and produces contextualized embeddings for words and entities in the input text. The model is trained using a new masked entity prediction task that aims to train the model by predicting randomly masked entities in entity-annotated texts obtained from Wikipedia. We further extend the model by solving ED as a sequential decision task to capture global contextual information. We evaluate our model using six standard ED datasets and achieve new state-of-the-art results on all but one dataset.
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