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Radical pair recombination reactions are known to be sensitive to extremely weak magnetic fields, and can therefore be said to function as molecular magnetoreceptors. The classic example is a carotenoid-porphyrin-fullerene (C+PF-) radical pair that has been shown to provide a proof-of-principle for the operation of a chemical compass [K. Maeda et al., Nature 453, 387 (2008)]. Previous simulations of this radical pair have employed semiclassical approximations, which are routinely applicable to its 47 coupled electronic and nuclear spins. However, calculating the exact quantum mechanical spin dynamics presents a significant challenge, and has not been possible before now. Here we use a recently developed method to perform numerically converged simulations of the C+PF- quantum mechanical spin dynamics, including all coupled spins. Comparison of these quantum mechanical simulations with various semiclassical approximations reveals that, while it is not perfect, the best semiclassical approximation does capture essentially all of the relevant physics in this problem.
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We propose a trajectory-based method for simulating nonadiabatic dynamics in molecular systems with two coupled electronic states. Employing a quantum-mechanically exact mapping of the two-level problem to a spin-1/2 coherent state, we construct a classical phase space of a spin vector constrained to a spherical surface with a radius consistent with the quantum magnitude of the spin. In contrast with the singly-excited harmonic oscillator basis used in Meyer-Miller-Stock-Thoss (MMST) mapping, the theory requires no additional projection operators onto the space of physical states. When treated under a quasiclassical approximation, we show that the resulting dynamics is equivalent to that generated by the MMST Hamiltonian. What differs is the value of the zero-point energy parameter as well as the initial distribution and the measurement operators. For various spin-boson models the results of our method are seen to be a significant improvement compared to both standard Ehrenfest dynamics and linearized semiclassical MMST mapping, without adding any computational complexity.
Ab initio molecular dynamics (AIMD) is a valuable technique for studying molecules and materials at finite temperatures where the nuclei evolve on potential energy surfaces obtained from accurate electronic structure calculations. In this work, a quantum computer-based AIMD method is presented. The electronic energies are calculated on a quantum computer using the variational quantum eigensolver (VQE) method. We compute the energy gradients numerically using the Hellmann-Feynman theorem, finite differences, and a correlated sampling technique. Our method only requires additional classical calculations of electron integrals for each degree of freedom, without any additional computations on a quantum computer beyond the initial VQE run. To achieve comparable accuracy, our gradient calculation method requires three to five orders of magnitude fewer measurements than other brute force methods without correlated sampling. As a proof of concept, AIMD dynamics simulations are demonstrated for the H2 molecule on IBM quantum devices. To the best of our knowledge, it is the first successful attempt to run AIMD on quantum devices for a chemical system. In addition, we demonstrate the validity of the method for larger molecules using full configuration interaction (FCI) wave functions. As quantum hardware and noise mitigation techniques continue to improve, the method can be utilized for studying larger molecular and material systems.
Recently, a new class of carbon allotrope called protomene was proposed. This new structure is composed of sp2 and sp3 carbon-bonds. Topologically, protomene can be considered as an sp3 carbon structure (~80% of this bond type) doped by sp2 carbons. First-principles simulations have shown that protomene presents an electronic bandgap of ~3.4 eV. However, up to now, its mechanical properties have not been investigated. In this work, we have investigated protomene mechanical behavior under tensile strain through fully atomistic reactive molecular dynamics simulations using the ReaxFF force field, as available in the LAMMPS code. At room temperature, our results show that the protomene is very stable and the obtained ultimate strength and ultimate stress indicates an anisotropic behavior. The highest ultimate strength was obtained for the x-direction, with a value of ~110 GPa. As for the ultimate strain, the highest one was for the z-direction (~25% of strain) before protomene mechanical fracture.
We present a new non-adiabatic ring polymer molecular dynamics (NRPMD) method based on the spin mapping formalism, which we refer to as the spin-mapping NRPMD (SM-NRPMD) approach. We derive the path-integral partition function expression using the spin coherent state basis for the electronic states and the ring polymer formalism for the nuclear degrees of freedom (DOFs). This partition function provides an efficient sampling of the quantum statistics. Using the basic property of the Stratonovich-Weyl transformation, we derive a Hamiltonian which we propose for the dynamical propagation of the coupled spin mapping variables and the nuclear ring polymer. The accuracy of the SM-NRPMD method is numerically demonstrated by computing nuclear position and population auto-correlation functions of non-adiabatic model systems. The results from SM-NRPMD agree very well with the numerically exact results. The main advantage of using the spin mapping variables over the harmonic oscillator mapping variables is numerically demonstrated, where the former provides nearly time-independent expectation values of physical observables for systems under thermal equilibrium, the latter can not preserve the initial quantum Boltzmann distribution. We also explicitly demonstrate that SM-NRPMD provides invariant dynamics upon various ways of partitioning the state-dependent and state-independent potentials.
We show that the centroid molecular dynamics (CMD) method provides a realistic way to calculate the thermal diffusivity $a=lambda/rho c_{rm V}$ of a quantum mechanical liquid such as para-hydrogen. Once $a$ has been calculated, the thermal conductivity can be obtained from $lambda=rho c_{rm V}a$, where $rho$ is the density of the liquid and $c_{rm V}$ is the constant-volume heat capacity. The use of this formula requires an accurate quantum mechanical heat capacity $c_{rm V}$, which can be obtained from a path integral molecular dynamics simulation. The thermal diffusivity can be calculated either from the decay of the equilibrium density fluctuations in the liquid or by using the Green-Kubo relation to calculate the CMD approximation to $lambda$ and then dividing this by the corresponding approximation to $rho c_{rm V}$. We show that both approaches give the same results for liquid para-hydrogen and that these results are in good agreement with experimental measurements of the thermal conductivity over a wide temperature range. In particular, they correctly predict a decrease in the thermal conductivity at low temperatures -- an effect that stems from the decrease in the quantum mechanical heat capacity and has eluded previous para-hydrogen simulations. We also show that the method gives equally good agreement with experimental measurements for the thermal conductivity of normal liquid helium.
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