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Register a new userExtracting Novel Facts from Tables for Knowledge Graph Completion (Extended version)
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Added by
Benno Kruit
Publication date
2019
fields
Informatics Engineering
and research's language is
English
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We propose a new end-to-end method for extending a Knowledge Graph (KG) from tables. Existing techniques tend to interpret tables by focusing on information that is already in the KG, and therefore tend to extract many redundant facts. Our method aims to find more novel facts. We introduce a new technique for table interpretation based on a scalable graphical model using entity similarities. Our method further disambiguates cell values using KG embeddings as additional ranking method. Other distinctive features are the lack of assumptions about the underlying KG and the enabling of a fine-grained tuning of the precision/recall trade-off of extracted facts. Our experiments show that our approach has a higher recall during the interpretation process than the state-of-the-art, and is more resistant against the bias observed in extracting mostly redundant facts since it produces more novel extractions.
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Searching for papers from different academic databases is the most commonly used method by research beginners to obtain cross-domain technical solutions. However, it is usually inefficient and sometimes even useless because traditional search methods neither consider knowledge heterogeneity in different domains nor build the bottom layer of search, including but not limited to the characteristic description text of target solutions and solutions to be excluded. To alleviate this problem, a novel paper recommendation method is proposed herein by introducing master-slave domain knowledge graphs, which not only help users express their requirements more accurately but also helps the recommendation system better express knowledge. Specifically, it is not restricted by the cold start problem and is a challenge-oriented method. To identify the rationality and usefulness of the proposed method, we selected two cross-domains and three different academic databases for verification. The experimental results demonstrate the feasibility of obtaining new technical papers in the cross-domain scenario by research beginners using the proposed method. Further, a new research paradigm for research beginners in the early stages is proposed herein.
Due to the lack of structure, scholarly knowledge remains hardly accessible for machines. Scholarly knowledge graphs have been proposed as a solution. Creating such a knowledge graph requires manual effort and domain experts, and is therefore time-consuming and cumbersome. In this work, we present a human-in-the-loop methodology used to build a scholarly knowledge graph leveraging literature survey articles. Survey articles often contain manually curated and high-quality tabular information that summarizes findings published in the scientific literature. Consequently, survey articles are an excellent resource for generating a scholarly knowledge graph. The presented methodology consists of five steps, in which tables and references are extracted from PDF articles, tables are formatted and finally ingested into the knowledge graph. To evaluate the methodology, 92 survey articles, containing 160 survey tables, have been imported in the graph. In total, 2,626 papers have been added to the knowledge graph using the presented methodology. The results demonstrate the feasibility of our approach, but also indicate that manual effort is required and thus underscore the important role of human experts.
OBJECTIVE: Leverage existing biomedical NLP tools and DS domain terminology to produce a novel and comprehensive knowledge graph containing dietary supplement (DS) information for discovering interactions between DS and drugs, or Drug-Supplement Interactions (DSI). MATERIALS AND METHODS: We created SemRepDS (an extension of SemRep), capable of extracting semantic relations from abstracts by leveraging a DS-specific terminology (iDISK) containing 28,884 DS terms not found in the UMLS. PubMed abstracts were processed using SemRepDS to generate semantic relations, which were then filtered using a PubMedBERT-based model to remove incorrect relations before generating our knowledge graph (SuppKG). Two pathways are used to identify potential DS-Drug interactions which are then evaluated by medical professionals for mechanistic plausibility. RESULTS: Comparison analysis found that SemRepDS returned 206.9% more DS relations and 158.5% more DS entities than SemRep. The fine-tuned BERT model obtained an F1 score of 0.8605 and removed 43.86% of the relations, improving the precision of the relations by 26.4% compared to pre-filtering. SuppKG consists of 2,928 DS-specific nodes. Manual review of findings identified 44 (88%) proposed DS-Gene-Drug and 32 (64%) proposed DS-Gene1-Function-Gene2-Drug pathways to be mechanistically plausible. DISCUSSION: The additional relations extracted using SemRepDS generated SuppKG that was used to find plausible DSI not found in the current literature. By the nature of the SuppKG, these interactions are unlikely to have been found using SemRep without the expanded DS terminology. CONCLUSION: We successfully extend SemRep to include DS information and produce SuppKG which can be used to find potential DS-Drug interactions.
GraphQL is a query language for APIs and a runtime for executing those queries, fetching the requested data from existing microservices, REST APIs, databases, or other sources. Its expressiveness and its flexibility have made it an attractive candidate for API providers in many industries, especially through the web. A major drawback to blindly servicing a clients query in GraphQL is that the cost of a query can be unexpectedly large, creating computation and resource overload for the provider, and API rate-limit overages and infrastructure overload for the client. To mitigate these drawbacks, it is necessary to efficiently estimate the cost of a query before executing it. Estimating query cost is challenging, because GraphQL queries have a nested structure, GraphQL APIs follow different design conventions, and the underlying data sources are hidden. Estimates based on worst-case static query analysis have had limited success because they tend to grossly overestimate cost. We propose a machine-learning approach to efficiently and accurately estimate the query cost. We also demonstrate the power of this approach by testing it on query-response data from publicly available commercial APIs. Our framework is efficient and predicts query costs with high accuracy, consistently outperforming the static analysis by a large margin.
Recommender systems should adapt to user interests as the latter evolve. A prevalent cause for the evolution of user interests is the influence of their social circle. In general, when the interests are not known, online algorithms that explore the recommendation space while also exploiting observed preferences are preferable. We present online recommendation algorithms rooted in the linear multi-armed bandit literature. Our bandit algorithms are tailored precisely to recommendation scenarios where user interests evolve under social influence. In particular, we show that our adaptations of the classic LinREL and Thompson Sampling algorithms maintain the same asymptotic regret bounds as in the non-social case. We validate our approach experimentally using both synthetic and real datasets.
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