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Register a new userCreating a Scholarly Knowledge Graph from Survey Article Tables
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Added by
Allard Oelen
Publication date
2020
fields
Informatics Engineering
and research's language is
English
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Due to the lack of structure, scholarly knowledge remains hardly accessible for machines. Scholarly knowledge graphs have been proposed as a solution. Creating such a knowledge graph requires manual effort and domain experts, and is therefore time-consuming and cumbersome. In this work, we present a human-in-the-loop methodology used to build a scholarly knowledge graph leveraging literature survey articles. Survey articles often contain manually curated and high-quality tabular information that summarizes findings published in the scientific literature. Consequently, survey articles are an excellent resource for generating a scholarly knowledge graph. The presented methodology consists of five steps, in which tables and references are extracted from PDF articles, tables are formatted and finally ingested into the knowledge graph. To evaluate the methodology, 92 survey articles, containing 160 survey tables, have been imported in the graph. In total, 2,626 papers have been added to the knowledge graph using the presented methodology. The results demonstrate the feasibility of our approach, but also indicate that manual effort is required and thus underscore the important role of human experts.
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Scholarly article impact reflects the significance of academic output recognised by academic peers, and it often plays a crucial role in assessing the scientific achievements of researchers, teams, institutions and countries. It is also used for addressing various needs in the academic and scientific arena, such as recruitment decisions, promotions, and funding allocations. This article provides a comprehensive review of recent progresses related to article impact assessment and prediction. The~review starts by sharing some insight into the article impact research and outlines current research status. Some core methods and recent progress are presented to outline how article impact metrics and prediction have evolved to consider integrating multiple networks. Key techniques, including statistical analysis, machine learning, data mining and network science, are discussed. In particular, we highlight important applications of each technique in article impact research. Subsequently, we discuss the open issues and challenges of article impact research. At the same time, this review points out some important research directions, including article impact evaluation by considering Conflict of Interest, time and location information, various distributions of scholarly entities, and rising stars.
Scientists always look for the most accurate and relevant answer to their queries on the scholarly literature. Traditional scholarly search systems list documents instead of providing direct answers to the search queries. As data in knowledge graphs are not acquainted semantically, they are not machine-readable. Therefore, a search on scholarly knowledge graphs ends up in a full-text search, not a search in the content of scholarly literature. In this demo, we present a faceted search system that retrieves data from a scholarly knowledge graph, which can be compared and filtered to better satisfy user information needs. Our practices novelty is that we use dynamic facets, which means facets are not fixed and will change according to the content of a comparison.
PubMed is an essential resource for the medical domain, but useful concepts are either difficult to extract or are ambiguated, which has significantly hindered knowledge discovery. To address this issue, we constructed a PubMed knowledge graph (PKG) by extracting bio-entities from 29 million PubMed abstracts, disambiguating author names, integrating funding data through the National Institutes of Health (NIH) ExPORTER, collecting affiliation history and educational background of authors from ORCID, and identifying fine-grained affiliation data from MapAffil. Through the integration of the credible multi-source data, we could create connections among the bio-entities, authors, articles, affiliations, and funding. Data validation revealed that the BioBERT deep learning method of bio-entity extraction significantly outperformed the state-of-the-art models based on the F1 score (by 0.51%), with the author name disambiguation (AND) achieving a F1 score of 98.09%. PKG can trigger broader innovations, not only enabling us to measure scholarly impact, knowledge usage, and knowledge transfer, but also assisting us in profiling authors and organizations based on their connections with bio-entities. The PKG is freely available on Figshare (https://figshare.com/s/6327a55355fc2c99f3a2, simplified version that exclude PubMed raw data) and TACC website (http://er.tacc.utexas.edu/datasets/ped, full version).
We propose a new end-to-end method for extending a Knowledge Graph (KG) from tables. Existing techniques tend to interpret tables by focusing on information that is already in the KG, and therefore tend to extract many redundant facts. Our method aims to find more novel facts. We introduce a new technique for table interpretation based on a scalable graphical model using entity similarities. Our method further disambiguates cell values using KG embeddings as additional ranking method. Other distinctive features are the lack of assumptions about the underlying KG and the enabling of a fine-grained tuning of the precision/recall trade-off of extracted facts. Our experiments show that our approach has a higher recall during the interpretation process than the state-of-the-art, and is more resistant against the bias observed in extracting mostly redundant facts since it produces more novel extractions.
The vast amount of research produced at institutions world-wide is extremely diverse, and coarse-grained quantitative measures of impact often obscure the individual contributions of these institutions to specific research fields and topics. We show that by applying an information retrieval model to index research articles which are faceted by institution and time, we can develop tools to rank institutions given a keyword query. We present an interactive atlas, Quoka, designed to enable a user to explore these rankings contextually by geography and over time. Through a set of use cases we demonstrate that the atlas can be used to perform sensemaking tasks to learn and collect information about the relationships between institutions and scholarly knowledge production.
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