Do you want to publish a course? Click here

Viscosity independent diffusion mediated by death and reproduction in biofilms

65   0   0.0 ( 0 )
 Added by Peter Yunker
 Publication date 2019
  fields Physics
and research's language is English




Ask ChatGPT about the research

Bacterial biofilms, surface-attached communities of cells, are in some respects similar to colloidal solids; both are densely packed with non-zero yield stresses. However, unlike non-living materials, bacteria reproduce and die, breaking mechanical equilibrium and inducing collective dynamic responses. We report experiments and theory investigating the motion of immotile Vibrio cholerae, which can kill each other and reproduce in biofilms. We vary viscosity by using bacterial variants that secrete different amounts of extracellular matrix polymers, but are otherwise identical. Unlike thermally-driven diffusion, in which diffusivity decreases with increased viscosity, we find that cellular motion mediated by death and reproduction is independent of viscosity over timescales relevant to bacterial reproduction. To understand this surprising result, we use two separate modeling approaches. First we perform explicitly mechanical simulations of one-dimensional chains of Voigt-Kelvin elements that can die and reproduce. Next, we perform an independent statistical approach, modeling Brownian motion with the classic Langevin equation under an effective temperature that depends on cellular division rate. The diffusion of cells in both approaches agrees quite well, supporting a kinetic interpretation for the effective temperature used here and developed in previous work. As the viscoelastic behavior of biofilms is believed to play a large role in their anomalous biological properties, such as antibiotic resistance, the independence of cellular diffusive motion --- important for biofilm growth and remodeling --- on viscoelastic properties likely holds ecological, medical, and industrial relevance.



rate research

Read More

Cilia and flagella often exhibit synchronized behavior; this includes phase locking, as seen in {it Chlamydomonas}, and metachronal wave formation in the respiratory cilia of higher organisms. Since the observations by Gray and Rothschild of phase synchrony of nearby swimming spermatozoa, it has been a working hypothesis that synchrony arises from hydrodynamic interactions between beating filaments. Recent work on the dynamics of physically separated pairs of flagella isolated from the multicellular alga {it Volvox} has shown that hydrodynamic coupling alone is sufficient to produce synchrony. However, the situation is more complex in unicellular organisms bearing few flagella. We show that flagella of {it Chlamydomonas} mutants deficient in filamentary connections between basal bodies display markedly different synchronization from the wild type. We perform micromanipulation on configurations of flagella and conclude that a mechanism, internal to the cell, must provide an additional flagellar coupling. In naturally occurring species with 4, 8, or even 16 flagella, we find diverse symmetries of basal body positioning and of the flagellar apparatus that are coincident with specific gaits of flagellar actuation, suggesting that it is a competition between intracellular coupling and hydrodynamic interactions that ultimately determines the precise form of flagellar coordination in unicellular algae.
Solvent exchange is a simple method to produce surface nanodroplets on a substrate for a wide range of applications by displacing a solution of good solvent, poor solvent and oil (Solution A) by a poor solvent (Solution B). In this work, we show that the growth and coalescence of nanodroplets on a homogeneous surface is mediated by the viscosity of the solvent. We show that at high flow rates of viscous Solution B, the final droplet volume deviates from the scaling law that correlates final droplet volume to the flow rate of non-viscous Solution B, reported in previous work. We attribute this deviation to a two-regime growth in viscous Solution B, where transition from an initial, fast regime to a final slow regime influenced by the flow rate. Moreover, viscous solution B hinders the coalescence of growing droplets, leading to a distinct bimodal distribution of droplet size with stable nanodroplets, in contrast to a continuous size distribution of droplets in non-viscous case. We demonstrate that the group of small droplets produced in high viscosity environment may be applied for enhanced fluorescence detection with higher sensitivity and shorter response time. The finding of this work can potentially be applied for mediating the size distribution of surface nanodroplets on homogeneous surface without templates.
114 - Ophir Flomenbom 2011
The dynamics of classical hard particles in a quasi one-dimensional channel were studied since the 1960s and used for explaining processes in chemistry, physics and biology and in applications. Here we show that in a previously un-described file made of anomalous, independent, particles (with jumping times taken from, {psi}_{alpha} (t) t^(-1-{alpha}), 0<{alpha}<1), particles form clusters. At steady state, the percentage of particles in clusters is about, surd(1-{alpha}^3), only for anomalous {alpha}, characterizing the criticality of a phase transition. The asymptotic mean square displacement per particle in the file is about, log^2(t). We show numerically that this exciting phenomenon of a phase transition is very stable, and relate it with the mysterious phenomenon of rafts in biological membranes, and with regulation of biological channels.
The survival of many microorganisms, like textit{Leptospira} or textit{Spiroplasma} bacteria, can depend on their ability to navigate towards regions of favorable viscosity. While this ability, called viscotaxis, has been observed in several bacterial experiments, the underlying mechanism remains unclear. Here, we provide a framework to study viscotaxis of self-propelled swimmers in slowly varying viscosity fields and show that suitable body shapes create viscotaxis based on a systematic asymmetry of viscous forces acting on a microswimmer. Our results shed new light on viscotaxis in textit{Spiroplasma} and textit{Leptospira} and suggest that dynamic body shape changes exhibited by both types of microorganisms may have an unrecognized functionality: to prevent them from drifting to low viscosity regions where they swim poorly. The present theory classifies microswimmers regarding their ability to show viscotaxis and can be used to design synthetic viscotactic swimmers, e.g. for delivering drugs to a target region distinguished by viscosity.
In living cells, proteins combine 3D bulk diffusion and 1D sliding along the DNA to reach a target faster. This process is known as facilitated diffusion, and we investigate its dynamics in the physiologically relevant case of confined DNA. The confining geometry and DNA elasticity are key parameters: we find that facilitated diffusion is most efficient inside an isotropic volume, and on a flexible polymer. By considering the typical copy numbers of proteins in vivo, we show that the speedup due to sliding becomes insensitive to fine tuning of parameters, rendering facilitated diffusion a robust mechanism to speed up intracellular diffusion-limited reactions. The parameter range we focus on is relevant for in vitro systems and for facilitated diffusion on yeast chromatin.
comments
Fetching comments Fetching comments
Sign in to be able to follow your search criteria
mircosoft-partner

هل ترغب بارسال اشعارات عن اخر التحديثات في شمرا-اكاديميا