The rapid growth in published clinical trials makes it difficult to maintain up-to-date systematic reviews, which require finding all relevant trials. This leads to policy and practice decisions based on out-of-date, incomplete, and biased subsets of
available clinical evidence. Extracting and then normalising Population, Intervention, Comparator, and Outcome (PICO) information from clinical trial articles may be an effective way to automatically assign trials to systematic reviews and avoid searching and screening---the two most time-consuming systematic review processes. We propose and test a novel approach to PICO span detection. The major difference between our proposed method and previous approaches comes from detecting spans without needing annotated span data and using only crowdsourced sentence-level annotations. Experiments on two datasets show that PICO span detection results achieve much higher results for recall when compared to fully supervised methods with PICO sentence detection at least as good as human annotations. By removing the reliance on expert annotations for span detection, this work could be used in a human-machine pipeline for turning low-quality, crowdsourced, and sentence-level PICO annotations into structured information that can be used to quickly assign trials to relevant systematic reviews.
Simultaneous span detection and classification is a task not currently addressed in standard NLP frameworks. The present paper describes why and how an EncoderDecoder model was used to combine span detection and classification to address subtask 2 of SemEval-2021 Task 6.
This paper presents our system submission to task 5: Toxic Spans Detection of the SemEval-2021 competition. The competition aims at detecting the spans that make a toxic span toxic. In this paper, we demonstrate our system for detecting toxic spans,
which includes expanding the toxic training set with Local Interpretable Model-Agnostic Explanations (LIME), fine-tuning RoBERTa model for detection, and error analysis. We found that feeding the model with an expanded training set using Reddit comments of polarized-toxicity and labeling with LIME on top of logistic regression classification could help RoBERTa more accurately learn to recognize toxic spans. We achieved a span-level F1 score of 0.6715 on the testing phase. Our quantitative and qualitative results show that the predictions from our system could be a good supplement to the gold training set's annotations.
This article introduces the system description of the hub team, which explains the related work and experimental results of our team's participation in SemEval 2021 Task 5: Toxic Spans Detection. The data for this shared task comes from some posts on
the Internet. The task goal is to identify the toxic content contained in these text data. We need to find the span of the toxic text in the text data as accurately as possible. In the same post, the toxic text may be one paragraph or multiple paragraphs. Our team uses a classification scheme based on word-level to accomplish this task. The system we used to submit the results is ALBERT+BILSTM+CRF. The result evaluation index of the task submission is the F1 score, and the final score of the prediction result of the test set submitted by our team is 0.6640226029.
