Nested Named Entity Recognition (NNER) has been extensively studied, aiming to identify all nested entities from potential spans (i.e., one or more continuous tokens). However, recent studies for NNER either focus on tedious tagging schemas or utiliz
e complex structures, which fail to learn effective span representations from the input sentence with highly nested entities. Intuitively, explicit span representations will contribute to NNER due to the rich context information they contain. In this study, we propose a Hierarchical Transformer (HiTRANS) network for the NNER task, which decomposes the input sentence into multi-grained spans and enhances the representation learning in a hierarchical manner. Specifically, we first utilize a two-phase module to generate span representations by aggregating context information based on a bottom-up and top-down transformer network. Then a label prediction layer is designed to recognize nested entities hierarchically, which naturally explores semantic dependencies among different spans. Experiments on GENIA, ACE-2004, ACE-2005 and NNE datasets demonstrate that our proposed method achieves much better performance than the state-of-the-art approaches.
To address a looming crisis of unreproducible evaluation for named entity recognition, we propose guidelines and introduce SeqScore, a software package to improve reproducibility. The guidelines we propose are extremely simple and center around trans
parency regarding how chunks are encoded and scored. We demonstrate that despite the apparent simplicity of NER evaluation, unreported differences in the scoring procedure can result in changes to scores that are both of noticeable magnitude and statistically significant. We describe SeqScore, which addresses many of the issues that cause replication failures.
Named entity disambiguation (NED), which involves mapping textual mentions to structured entities, is particularly challenging in the medical domain due to the presence of rare entities. Existing approaches are limited by the presence of coarse-grain
ed structural resources in biomedical knowledge bases as well as the use of training datasets that provide low coverage over uncommon resources. In this work, we address these issues by proposing a cross-domain data integration method that transfers structural knowledge from a general text knowledge base to the medical domain. We utilize our integration scheme to augment structural resources and generate a large biomedical NED dataset for pretraining. Our pretrained model with injected structural knowledge achieves state-of-the-art performance on two benchmark medical NED datasets: MedMentions and BC5CDR. Furthermore, we improve disambiguation of rare entities by up to 57 accuracy points.
As a result of unstructured sentences and some misspellings and errors, finding named entities in a noisy environment such as social media takes much more effort. ParsTwiNER contains about 250k tokens, based on standard instructions like MUC-6 or CoN
LL 2003, gathered from Persian Twitter. Using Cohen's Kappa coefficient, the consistency of annotators is 0.95, a high score. In this study, we demonstrate that some state-of-the-art models degrade on these corpora, and trained a new model using parallel transfer learning based on the BERT architecture. Experimental results show that the model works well in informal Persian as well as in formal Persian.
