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Pre-main sequence stars are variable sources. In stars with disks, this variability is related to the morphology of the inner circumstellar region (<0.1 AU) and that of the photosphere and corona, all impossible to be spatially resolved with present day techniques. This has been the main motivation for the Coordinated Synoptic Investigation of NGC 2264. In this paper, we focus on the stars with disks. We analyze the X-ray spectral properties extracted during optical bursts and dips in order to unveil the nature of these phenomena. We analyze simultaneous CoRoT and Chandra/ACIS-I observations to search for coherent optical and X-ray flux variability in stars with disks. Then, stars are analyzed in two different samples. In stars with variable extinction, we look for a simultaneous increase of optical extinction and X-ray absorption during the optical dips; in stars with accretion bursts, we search for soft X-ray emission and increasing X-ray absorption during the bursts. Results. We find evidence for coherent optical and X-ray flux variability among the stars with variable extinction. In 9/24 stars with optical dips, we observe a simultaneous increase of X-ray absorption and optical extinction. In seven dips, it is possible to calculate the NH/AV ratio in order to infer the composition of the obscuring material. In 5/20 stars with optical accretion bursts, we observe increasing soft X-ray emission during the bursts that we associate to the emission of accreting gas. It is not surprising that these properties are not observed in all the stars with dips and bursts, since favorable geometric configurations are required. The observed variable absorption during the dips is mainly due to dust-free material in accretion streams. In stars with accretion bursts, we observe on average a larger soft X-ray spectral component not observed in non accreting stars.
Pre-main sequence stars are variable sources. In diskless stars this variability is mainly due to the rotational modulation of dark photospheric spots and active regions, as in main sequence stars even if associated with a stronger magnetic activity.
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