ترغب بنشر مسار تعليمي؟ اضغط هنا

Application of DFTB and machine learning to evaluate the stability of biomass intermediates on the Rh(111) surface

71   0   0.0 ( 0 )
 نشر من قبل Chaoyi Chang
 تاريخ النشر 2021
  مجال البحث فيزياء
والبحث باللغة English




اسأل ChatGPT حول البحث

Biomass compounds adsorbed on surfaces are challenging to study due to the large number of possible species and adsorption geometries. In this work, possible intermediates of erythrose, glyceraldehyde, glycerol and propionic acid are studied on the Rh(111) surface. The intermediates and elementary reactions are generated from first 2 recursions of a recursive bond-breaking algorithm. These structures are used as the input of an unsupervised Mol2Vec algorithm to generate vector descriptors. A data-driven scheme to classify the reactions is developed and adsorption energies are predicted. The lowest mean absolute error (MAE) of our prediction on adsorption energies is 0.39 eV, and the relative ordering of different surface adsorption geometries is relatively accurate. We show that combining geometries from density functional tight-binding (DFTB) calculations with energies from machine-learning predictions provides a novel workflow for rapidly assessing the stability of various molecular geometries on the Rh(111) surface.

قيم البحث

اقرأ أيضاً

The CO_{2} electro-reduction reaction (CORR) is a promising avenue to convert greenhouse gases into high-value fuels and chemicals, in addition to being an attractive method for storing intermittent renewable energy. Although polycrystalline Cu surfa ces have long known to be unique in their capabilities of catalyzing the conversion of CO_{2} to higher-order C1 and C2 fuels, such as hydrocarbons (CH_{4}, C_{2}H_{4} etc.) and alcohols (CH_{3}OH, C_{2}H_{5}OH), product selectivity remains a challenge. In this study, we select three metal catalysts (Pt, Au, Cu) and apply in situ surface enhanced infrared absorption spectroscopy (SEIRAS) and ambient-pressure X-ray photoelectron spectroscopy (APXPS), coupled to density-functional theory (DFT) calculations, to get insight into the reaction pathway for the CORR. We present a comprehensive reaction mechanism for the CORR, and show that the preferential reaction pathway can be rationalized in terms of metal-carbon (M-C) and metal-oxygen (M-O) affinity. We show that the final products are determined by the configuration of the initial intermediates, C-bound and O-bound, which can be obtained from CO_{2} and (H)CO_{3}, respectively. C1 hydrocarbons are produced via OCH_{3, ad} intermediates obtained from O-bound CO_{3, ad} and require a catalyst with relatively high affinity for O-bound intermediates. Additionally, C2 hydrocarbon formation is suggested to result from the C-C coupling between C-bound CO_{ad} and (H)CO_{ad}, which requires an optimal affinity for the C-bound species, so that (H)CO_{ad} can be further reduced without poisoning the catalyst surface. Our findings pave the way towards a design strategy for CORR catalysts with improved selectivity, based on this experimental/theoretical reaction mechanisms that have been identified.
We present a proof of concept that machine learning techniques can be used to predict the properties of CNOHF energetic molecules from their molecular structures. We focus on a small but diverse dataset consisting of 109 molecular structures spread a cross ten compound classes. Up until now, candidate molecules for energetic materials have been screened using predictions from expensive quantum simulations and thermochemical codes. We present a comprehensive comparison of machine learning models and several molecular featurization methods - sum over bonds, custom descriptors, Coulomb matrices, bag of bonds, and fingerprints. The best featurization was sum over bonds (bond counting), and the best model was kernel ridge regression. Despite having a small data set, we obtain acceptable errors and Pearson correlations for the prediction of detonation pressure, detonation velocity, explosive energy, heat of formation, density, and other properties out of sample. By including another dataset with 309 additional molecules in our training we show how the error can be pushed lower, although the convergence with number of molecules is slow. Our work paves the way for future applications of machine learning in this domain, including automated lead generation and interpreting machine learning models to obtain novel chemical insights.
The studies of electronic and magnetic properties of V-Pc molecule adsorbed onto Au(111) surface are based on ab-initio calculations in the framework of density functional theory. We compute adsorption energies, investigate interaction mechanisms bet ween constituents of the hybrid system consisting of V-Pc molecule and Au surface, and determine geometry changes in the system, particularly in the grafted molecule. We find out that the energetically most stable configuration of the V-Pc/Au(111) occurs when V-Pc is grafted to the Au surfaces fcc site, which leads to the reduction of the point group symmetry of the hybrid system in comparison to the free standing V-Pc molecule. Further, our studies reveal that the electronic structure and magnetic properties of the V-Pc change significantly after adsorption to the Au(111). Generally, these studies shed light on physical mechanisms of the V-Pc adsorption to metallic surfaces and open up new prospects for design of novel spintronic devices.
The electronic and crystallographic structure of the graphene/Rh(111) moire lattice is studied via combination of density-functional theory calculations and scanning tunneling and atomic force microscopy (STM and AFM). Whereas the principal contrast between hills and valleys observed in STM does not depend on the sign of applied bias voltage, the contrast in atomically resolved AFM images strongly depends on the frequency shift of the oscillating AFM tip. The obtained results demonstrate the perspectives of application atomic force microscopy/spectroscopy for the probing of the chemical contrast at the surface.
Boron forms compounds with nearly all metals, with notable exception of copper and other group IB and IIB elements. Here, we report an unexpected discovery of ordered copper boride grown epitaxially on Cu(111) under ultrahigh vacuum. Scanning tunneli ng microscopy experiments combined with ab initio evolutionary structure prediction reveal a remarkably complex structure of 2D-Cu8B14. Strong intra-layer p-d hybridization and a large amount of charge transfer between Cu and B atoms are the key factors for the emergence of copper boride. This makes the discovered material unique and opens up the possibility of synthesizing ordered low-dimensional structures in similar immiscible systems.
التعليقات
جاري جلب التعليقات جاري جلب التعليقات
سجل دخول لتتمكن من متابعة معايير البحث التي قمت باختيارها
mircosoft-partner

هل ترغب بارسال اشعارات عن اخر التحديثات في شمرا-اكاديميا