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We develop Process Execution Graphs (PEG), a document-level representation of real-world wet lab biochemistry protocols, addressing challenges such as cross-sentence relations, long-range coreference, grounding, and implicit arguments. We manually annotate PEGs in a corpus of complex lab protocols with a novel interactive textual simulator that keeps track of entity traits and semantic constraints during annotation. We use this data to develop graph-prediction models, finding them to be good at entity identification and local relation extraction, while our corpus facilitates further exploration of challenging long-range relations.
Our proposed system FAMULUS helps students learn to diagnose based on automatic feedback in virtual patient simulations, and it supports instructors in labeling training data. Diagnosing is an exceptionally difficult skill to obtain but vital for m
Manually labeling objects by tracing their boundaries is a laborious process. In Polygon-RNN++ the authors proposed Polygon-RNN that produces polygonal annotations in a recurrent manner using a CNN-RNN architecture, allowing interactive correction vi
In this paper we propose a multi-task sequence prediction system, based on recurrent neural networks and used to annotate on multiple levels an Arabizi Tunisian corpus. The annotation performed are text classification, tokenization, PoS tagging and e
Most information extraction methods focus on binary relations expressed within single sentences. In high-value domains, however, $n$-ary relations are of great demand (e.g., drug-gene-mutation interactions in precision oncology). Such relations often
Currently, no large-scale training data is available for the task of scientific paper summarization. In this paper, we propose a novel method that automatically generates summaries for scientific papers, by utilizing videos of talks at scientific con