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dPOLY: Deep Learning of Polymer Phases and Phase Transition

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 نشر من قبل Tarak Patra
 تاريخ النشر 2020
  مجال البحث فيزياء
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Machine learning (ML) and artificial intelligence (AI) have the remarkable ability to classify, recognize, and characterize complex patterns and trends in large data sets. Here, we adopt a subclass of machine learning methods viz., deep learnings and develop a general-purpose AI tool - dPOLY for analyzing molecular dynamics trajectory and predicting phases and phase transitions in polymers. An unsupervised deep neural network is used within this framework to map a molecular dynamics trajectory undergoing thermophysical treatment such as cooling, heating, drying, or compression to a lower dimension. A supervised deep neural network is subsequently developed based on the lower dimensional data to characterize the phases and phase transition. As a proof of concept, we employ this framework to study coil to globule transition of a model polymer system. We conduct coarse-grained molecular dynamics simulations to collect molecular dynamics trajectories of a single polymer chain over a wide range of temperatures and use dPOLY framework to predict polymer phases. The dPOLY framework accurately predicts the critical temperatures for the coil to globule transition for a wide range of polymer sizes. This method is generic and can be extended to capture various other phase transitions and dynamical crossovers in polymers and other soft materials.

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We report a deep learning (DL) framework viz. deep autoencoder that autonomously discovers an appropriate order parameter from molecular dynamics (MD) simulation data to characterize the coil to globule phase transition of a polymer. The deep autoenc oder encodes the 3N dimensional MD trajectory of a polymer in a one-dimensional feature space and, subsequently, decodes the one-dimensional feature to its original 3N dimensional polymer trajectory. The feature space representation of a polymer provides a new order parameter that accurately describes the coil to globule phase transition as a function of temperature. This method is very generic and extensible to identify flexible order parameters to characterize wide range of phase transitions that take place in polymers and other soft materials. Moreover, this MD-DL approach is computational very efficient than a pure MD based characterization of phase transition, and has potential implications in accelerating phase prediction.
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