ترغب بنشر مسار تعليمي؟ اضغط هنا

The Information-Geometric Perspective of Compositional Data Analysis

185   0   0.0 ( 0 )
 نشر من قبل Ionas Erb
 تاريخ النشر 2020
  مجال البحث الاحصاء الرياضي
والبحث باللغة English




اسأل ChatGPT حول البحث

Information geometry uses the formal tools of differential geometry to describe the space of probability distributions as a Riemannian manifold with an additional dual structure. The formal equivalence of compositional data with discrete probability distributions makes it possible to apply the same description to the sample space of Compositional Data Analysis (CoDA). The latter has been formally described as a Euclidean space with an orthonormal basis featuring components that are suitable combinations of the original parts. In contrast to the Euclidean metric, the information-geometric description singles out the Fisher information metric as the only one keeping the manifolds geometric structure invariant under equivalent representations of the underlying random variables. Well-known concepts that are valid in Euclidean coordinates, e.g., the Pythogorean theorem, are generalized by information geometry to corresponding notions that hold for more general coordinates. In briefly reviewing Euclidean CoDA and, in more detail, the information-geometric approach, we show how the latter justifies the use of distance measures and divergences that so far have received little attention in CoDA as they do not fit the Euclidean geometry favored by current thinking. We also show how entropy and relative entropy can describe amalgamations in a simple way, while Aitchison distance requires the use of geometric means to obtain more succinct relationships. We proceed to prove the information monotonicity property for Aitchison distance. We close with some thoughts about new directions in CoDA where the rich structure that is provided by information geometry could be exploited.

قيم البحث

اقرأ أيضاً

79 - Ionas Erb 2019
Partial correlations quantify linear association between two variables adjusting for the influence of the remaining variables. They form the backbone for graphical models and are readily obtained from the inverse of the covariance matrix. For composi tional data, the covariance structure is specified from log ratios of variables, so unless we try to open the data via a normalization, this implies changes in the definition and interpretation of partial correlations. In the present work, we elucidate how results derived by Aitchison (1986) lead to a natural definition of partial correlation that has a number of advantages over current measures of association. For this, we show that the residuals of log-ratios between a variable with a reference, when adjusting for all remaining variables including the reference, are reference-independent. Since the reference itself can be controlled for, correlations between residuals are defined for the variables directly without the necessity to recur to ratios except when specifying which variables are partialled out. Thus, perhaps surprisingly, partial correlations do not have the problems commonly found with measures of pairwise association on compositional data. They are well-defined between two variables, are properly scaled, and allow for negative association. By design, they are subcompositionally incoherent, but they share this property with conventional partial correlations (where results change when adjusting for the influence of fewer variables). We discuss the equivalence with normalization-based approaches whenever the normalizing variables are controlled for. We also discuss the partial variances and correlations we obtain from a previously studied data set of Roman glass cups.
Little known relations of the renown concept of the halfspace depth for multivariate data with notions from convex and affine geometry are discussed. Halfspace depth may be regarded as a measure of symmetry for random vectors. As such, the depth stan ds as a generalization of a measure of symmetry for convex sets, well studied in geometry. Under a mild assumption, the upper level sets of the halfspace depth coincide with the convex floating bodies used in the definition of the affine surface area for convex bodies in Euclidean spaces. These connections enable us to partially resolve some persistent open problems regarding theoretical properties of the depth.
We investigate the problem of inferring the causal predictors of a response $Y$ from a set of $d$ explanatory variables $(X^1,dots,X^d)$. Classical ordinary least squares regression includes all predictors that reduce the variance of $Y$. Using only the causal predictors instead leads to models that have the advantage of remaining invariant under interventions, loosely speaking they lead to invariance across different environments or heterogeneity patterns. More precisely, the conditional distribution of $Y$ given its causal predictors remains invariant for all observations. Recent work exploits such a stability to infer causal relations from data with different but known environments. We show that even without having knowledge of the environments or heterogeneity pattern, inferring causal relations is possible for time-ordered (or any other type of sequentially ordered) data. In particular, this allows detecting instantaneous causal relations in multivariate linear time series which is usually not the case for Granger causality. Besides novel methodology, we provide statistical confidence bounds and asymptotic detection results for inferring causal predictors, and present an application to monetary policy in macroeconomics.
Motivated by the problem of colocalization analysis in fluorescence microscopic imaging, we study in this paper structured detection of correlated regions between two random processes observed on a common domain. We argue that although intuitive, dir ect use of the maximum log-likelihood statistic suffers from potential bias and substantially reduced power, and introduce a simple size-based normalization to overcome this problem. We show that scanning with the proposed size-corrected likelihood ratio statistics leads to optimal correlation detection over a large collection of structured correlation detection problems.
376 - Vivien Goepp 2018
In epidemiological or demographic studies, with variable age at onset, a typical quantity of interest is the incidence of a disease (for example the cancer incidence). In these studies, the individuals are usually highly heterogeneous in terms of dat es of birth (the cohort) and with respect to the calendar time (the period) and appropriate estimation methods are needed. In this article a new estimation method is presented which extends classical age-period-cohort analysis by allowing interactions between age, period and cohort effects. This paper introduces a bidimensional regularized estimate of the hazard rate where a penalty is introduced on the likelihood of the model. This penalty can be designed either to smooth the hazard rate or to enforce consecutive values of the hazard to be equal, leading to a parsimonious representation of the hazard rate. In the latter case, we make use of an iterative penalized likelihood scheme to approximate the L0 norm, which makes the computation tractable. The method is evaluated on simulated data and applied on breast cancer survival data from the SEER program.
التعليقات
جاري جلب التعليقات جاري جلب التعليقات
سجل دخول لتتمكن من متابعة معايير البحث التي قمت باختيارها
mircosoft-partner

هل ترغب بارسال اشعارات عن اخر التحديثات في شمرا-اكاديميا