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تسجيل مستخدم جديدUsing trullekrul in pde2path -- anisotropic mesh adaptation for some Allen-Cahn models in 2D and 3D
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Hannes Uecker
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We describe by means of some examples how some functionality of the mesh adaptation package trullekrul can be used in pde2path.
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This paper develops entropy stable (ES) adaptive moving mesh schemes for the 2D and 3D special relativistic hydrodynamic (RHD) equations. They are built on the ES finite volume approximation of the RHD equations in curvilinear coordinates, the discre
te geometric conservation laws, and the mesh adaptation implemented by iteratively solving the Euler-Lagrange equations of the mesh adaption functional in the computational domain with suitably chosen monitor functions. First, a sufficient condition is proved for the two-point entropy conservative (EC) flux, by mimicking the derivation of the continuous entropy identity in curvilinear coordinates and using the discrete geometric conservation laws given by the conservative metrics method. Based on such sufficient condition, the EC fluxes for the RHD equations in curvilinear coordinates are derived and the second-order accurate semi-discrete EC schemes are developed to satisfy the entropy identity for the given convex entropy pair. Next, the semi-discrete ES schemes satisfying the entropy inequality are proposed by adding a suitable dissipation term to the EC scheme and utilizing linear reconstruction with the minmod limiter in the scaled entropy variables in order to suppress the numerical oscillations of the above EC scheme. Then, the semi-discrete ES schemes are integrated in time by using the second-order strong stability preserving explicit Runge-Kutta schemes. Finally, several numerical results show that our 2D and 3D ES adaptive moving mesh schemes effectively capture the localized structures, such as sharp transitions or discontinuities, and are more efficient than their counterparts on uniform mesh.
We explain the setup for using the pde2path libraries for Hopf bifurcation and continuation of branches of periodic orbits and give implementation details of the associated demo directories. See [Uecker, Comm. in Comp. Phys., 2019] for a description
of the basic algorithms and the mathematical background of the examples. Additionally we explain the treatment of Hopf bifurcations in systems with continuous symmetries, including the continuation of traveling waves and rotating waves in O(2) equivariant systems as relative equilibria, the continuation of Hopf bifurcation points via extended systems, and some simple setups for the bifurcation from periodic orbits associated to critical Floquet multipliers going through +-1.
In this paper, we propose and analyze a time-stepping method for the time fractional Allen-Cahn equation. The key property of the proposed method is its unconditional stability for general meshes, including the graded mesh commonly used for this type
of equations. The unconditional stability is proved through establishing a discrete nonlocal free energy dispassion law, which is also true for the continuous problem. The main idea used in the analysis is to split the time fractional derivative into two parts: a local part and a history part, which are discretized by the well known L1, L1-CN, and $L1^{+}$-CN schemes. Then an extended auxiliary variable approach is used to deal with the nonlinear and history term. The main contributions of the paper are: First, it is found that the time fractional Allen-Chan equation is a dissipative system related to a nonlocal free energy. Second, we construct efficient time stepping schemes satisfying the same dissipation law at the discrete level. In particular, we prove that the proposed schemes are unconditionally stable for quite general meshes. Finally, the efficiency of the proposed method is verified by a series of numerical experiments.
Despite decades of research in this area, mesh adaptation capabilities are still rarely found in numerical simulation software. We postulate that the primary reason for this is lack of usability. Integrating mesh adaptation into existing software is
difficult as non-trivial operators, such as error metrics and interpolation operators, are required, and integrating available adaptive remeshers is not straightforward. Our approach presented here is to first integrate Pragmatic, an anisotropic mesh adaptation library, into DMPlex, a PETSc object that manages unstructured meshes and their interactions with PETScs solvers and I/O routines. As PETSc is already widely used, this will make anisotropic mesh adaptation available to a much larger community. As a demonstration of this we describe the integration of anisotropic mesh adaptation into Firedrake, an automated Finite Element based system for the portable solution of partial differential equations which already uses PETSc solvers and I/O via DMPlex. We present a proof of concept of this integration with a three-dimensional advection test case.
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