ترغب بنشر مسار تعليمي؟ اضغط هنا

Efficient Learning of Discrete Graphical Models

80   0   0.0 ( 0 )
 نشر من قبل Marc Vuffray
 تاريخ النشر 2019
  مجال البحث الهندسة المعلوماتية
والبحث باللغة English




اسأل ChatGPT حول البحث

Graphical models are useful tools for describing structured high-dimensional probability distributions. Development of efficient algorithms for learning graphical models with least amount of data remains an active research topic. Reconstruction of graphical models that describe the statistics of discrete variables is a particularly challenging problem, for which the maximum likelihood approach is intractable. In this work, we provide the first sample-efficient method based on the Interaction Screening framework that allows one to provably learn fully general discrete factor models with node-specific discrete alphabets and multi-body interactions, specified in an arbitrary basis. We identify a single condition related to model parametrization that leads to rigorous guarantees on the recovery of model structure and parameters in any error norm, and is readily verifiable for a large class of models. Importantly, our bounds make explicit distinction between parameters that are proper to the model and priors used as an input to the algorithm. Finally, we show that the Interaction Screening framework includes all models previously considered in the literature as special cases, and for which our analysis shows a systematic improvement in sample complexity.



قيم البحث

اقرأ أيضاً

What is the optimal number of independent observations from which a sparse Gaussian Graphical Model can be correctly recovered? Information-theoretic arguments provide a lower bound on the minimum number of samples necessary to perfectly identify the support of any multivariate normal distribution as a function of model parameters. For a model defined on a sparse graph with $p$ nodes, a maximum degree $d$ and minimum normalized edge strength $kappa$, this necessary number of samples scales at least as $d log p/kappa^2$. The sample complexity requirements of existing methods for perfect graph reconstruction exhibit dependency on additional parameters that do not enter in the lower bound. The question of whether the lower bound is tight and achievable by a polynomial time algorithm remains open. In this paper, we constructively answer this question and propose an algorithm, termed DICE, whose sample complexity matches the information-theoretic lower bound up to a universal constant factor. We also propose a related algorithm SLICE that has a slightly higher sample complexity, but can be implemented as a mixed integer quadratic program which makes it attractive in practice. Importantly, SLICE retains a critical advantage of DICE in that its sample complexity only depends on quantities present in the information theoretic lower bound. We anticipate that this result will stimulate future search of computationally efficient sample-optimal algorithms.
Graphical models are widely used in science to represent joint probability distributions with an underlying conditional dependence structure. The inverse problem of learning a discrete graphical model given i.i.d samples from its joint distribution c an be solved with near-optimal sample complexity using a convex optimization method known as Generalized Regularized Interaction Screening Estimator (GRISE). But the computational cost of GRISE becomes prohibitive when the energy function of the true graphical model has higher-order terms. We introduce NeurISE, a neural net based algorithm for graphical model learning, to tackle this limitation of GRISE. We use neural nets as function approximators in an Interaction Screening objective function. The optimization of this objective then produces a neural-net representation for the conditionals of the graphical model. NeurISE algorithm is seen to be a better alternative to GRISE when the energy function of the true model has a high order with a high degree of symmetry. In these cases NeurISE is able to find the correct parsimonious representation for the conditionals without being fed any prior information about the true model. NeurISE can also be used to learn the underlying structure of the true model with some simple modifications to its training procedure. In addition, we also show a variant of NeurISE that can be used to learn a neural net representation for the full energy function of the true model.
Pairwise alignment of DNA sequencing data is a ubiquitous task in bioinformatics and typically represents a heavy computational burden. State-of-the-art approaches to speed up this task use hashing to identify short segments (k-mers) that are shared by pairs of reads, which can then be used to estimate alignment scores. However, when the number of reads is large, accurately estimating alignment scores for all pairs is still very costly. Moreover, in practice, one is only interested in identifying pairs of reads with large alignment scores. In this work, we propose a new approach to pairwise alignment estimation based on two key new ingredients. The first ingredient is to cast the problem of pairwise alignment estimation under a general framework of rank-one crowdsourcing models, where the workers responses correspond to k-mer hash collisions. These models can be accurately solved via a spectral decomposition of the response matrix. The second ingredient is to utilise a multi-armed bandit algorithm to adaptively refine this spectral estimator only for read pairs that are likely to have large alignments. The resulting algorithm iteratively performs a spectral decomposition of the response matrix for adaptively chosen subsets of the read pairs.
110 - Tomohiro Nishiyama 2018
In this paper, we introduce directed networks called `divergence network in order to perform graphical calculation of divergence functions. By using the divergence networks, we can easily understand the geometric meaning of calculation results and gr asp relations among divergence functions intuitively.
Graphical model selection in Markov random fields is a fundamental problem in statistics and machine learning. Two particularly prominent models, the Ising model and Gaussian model, have largely developed in parallel using different (though often rel ated) techniques, and several practical algorithms with rigorous sample complexity bounds have been established for each. In this paper, we adapt a recently proposed algorithm of Klivans and Meka (FOCS, 2017), based on the method of multiplicative weight updates, from the Ising model to the Gaussian model, via non-trivial modifications to both the algorithm and its analysis. The algorithm enjoys a sample complexity bound that is qualitatively similar to others in the literature, has a low runtime $O(mp^2)$ in the case of $m$ samples and $p$ nodes, and can trivially be implemented in an online manner.

الأسئلة المقترحة

التعليقات
جاري جلب التعليقات جاري جلب التعليقات
سجل دخول لتتمكن من متابعة معايير البحث التي قمت باختيارها
mircosoft-partner

هل ترغب بارسال اشعارات عن اخر التحديثات في شمرا-اكاديميا