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تسجيل مستخدم جديدContainer solutions for HPC Systems: A Case Study of Using Shifter on Blue Waters
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Software container solutions have revolutionized application development approaches by enabling lightweight platform abstractions within the so-called containers. Several solutions are being actively developed in attempts to bring the benefits of containers to high-performance computing systems with their stringent security demands on the one hand and fundamental resource sharing requirements on the other. In this paper, we discuss the benefits and short-comings of such solutions when deployed on real HPC systems and applied to production scientific applications.We highlight use cases that are either enabled by or significantly benefit from such solutions. We discuss the efforts by HPC system administrators and support staff to support users of these type of workloads on HPC systems not initially designed with these workloads in mind focusing on NCSAs Blue Waters system.
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Blue Waters is a Petascale-level supercomputer whose mission is to enable the national scientific and research community to solve grand challenge problems that are orders of magnitude more complex than can be carried out on other high performance com
puting systems. Given the important and unique role that Blue Waters plays in the U.S. research portfolio, it is important to have a detailed understanding of its workload in order to guide performance optimization both at the software and system configuration level as well as inform architectural balance tradeoffs. Furthermore, understanding the computing requirements of the Blue Waters workload (memory access, IO, communication, etc.), which is comprised of some of the most computationally demanding scientific problems, will help drive changes in future computing architectures, especially at the leading edge. With this objective in mind, the project team carried out a detailed workload analysis of Blue Waters.
We present a novel computational framework that connects Blue Waters, the NSF-supported, leadership-class supercomputer operated by NCSA, to the Laser Interferometer Gravitational-Wave Observatory (LIGO) Data Grid via Open Science Grid technology. To
enable this computational infrastructure, we configured, for the first time, a LIGO Data Grid Tier-1 Center that can submit heterogeneous LIGO workflows using Open Science Grid facilities. In order to enable a seamless connection between the LIGO Data Grid and Blue Waters via Open Science Grid, we utilize Shifter to containerize LIGOs workflow software. This work represents the first time Open Science Grid, Shifter, and Blue Waters are unified to tackle a scientific problem and, in particular, it is the first time a framework of this nature is used in the context of large scale gravitational wave data analysis. This new framework has been used in the last several weeks of LIGOs second discovery campaign to run the most computationally demanding gravitational wave search workflows on Blue Waters, and accelerate discovery in the emergent field of gravitational wave astrophysics. We discuss the implications of this novel framework for a wider ecosystem of Higher Performance Computing users.
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ingle HPC system. Although allocating the hybrid workloads within one system could potentially improve system efficiency, it is difficult to balance the tradeoff between the responsiveness of on-demand requests, the incentive for malleable jobs, and the performance of rigid applications. In this study, we present several scheduling mechanisms to address the issues involved in co-scheduling on-demand, rigid, and malleable jobs on a single HPC system. We extensively evaluate and compare their performance under various configurations and workloads. Our experimental results show that our proposed mechanisms are capable of serving on-demand workloads with minimal delay, offering incentives for declaring malleability, and improving system performance.
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