اشترك بالحزمة الذهبية واحصل على وصول غير محدود شمرا أكاديميا
تسجيل مستخدم جديدA Fast Quartet Tree Heuristic for Hierarchical Clustering
45
0
0.0
(
0
)
تأليف
Rudi L. Cilibrasi
اسأل ChatGPT حول البحث
ﻻ يوجد ملخص باللغة العربية
The Minimum Quartet Tree Cost problem is to construct an optimal weight tree from the $3{n choose 4}$ weighted quartet topologies on $n$ objects, where optimality means that the summed weight of the embedded quartet topologies is optimal (so it can be the case that the optimal tree embeds all quartets as nonoptimal topologies). We present a Monte Carlo heuristic, based on randomized hill climbing, for approximating the optimal weight tree, given the quartet topology weights. The method repeatedly transforms a dendrogram, with all objects involved as leaves, achieving a monotonic approximation to the exact single globally optimal tree. The problem and the solution heuristic has been extensively used for general hierarchical clustering of nontree-like (non-phylogeny) data in various domains and across domains with heterogeneous data. We also present a greatly improved heuristic, reducing the running time by a factor of order a thousand to ten thousand. All this is implemented and available, as part of the CompLearn package. We compare performance and running time of the original and improv
قيم البحث
اقرأ أيضاً
In this paper we make two novel contributions to hierarchical clustering. First, we introduce an anomalous pattern initialisation method for hierarchical clustering algorithms, called A-Ward, capable of substantially reducing the time they take to co
nverge. This method generates an initial partition with a sufficiently large number of clusters. This allows the cluster merging process to start from this partition rather than from a trivial partition composed solely of singletons. Our second contribution is an extension of the Ward and Ward p algorithms to the situation where the feature weight exponent can differ from the exponent of the Minkowski distance. This new method, called A-Ward pb{eta} , is able to generate a much wider variety of clustering solutions. We also demonstrate that its parameters can be estimated reasonably well by using a cluster validity index. We perform numerous experiments using data sets with two types of noise, insertion of noise features and blurring within-cluster values of some features. These experiments allow us to conclude: (i) our anomalous pattern initialisation method does indeed reduce the time a hierarchical clustering algorithm takes to complete, without negatively impacting its cluster recovery ability; (ii) A-Ward pb{eta} provides better cluster recovery than both Ward and Ward p.
Hierarchical clustering is a widely used approach for clustering datasets at multiple levels of granularity. Despite its popularity, existing algorithms such as hierarchical agglomerative clustering (HAC) are limited to the offline setting, and thus
require the entire dataset to be available. This prohibits their use on large datasets commonly encountered in modern learning applications. In this paper, we consider hierarchical clustering in the online setting, where points arrive one at a time. We propose two algorithms that seek to optimize the Moseley and Wang (MW) revenue function, a variant of the Dasgupta cost. These algorithms offer different tradeoffs between efficiency and MW revenue performance. The first algorithm, OTD, is a highly efficient Online Top Down algorithm which provably achieves a 1/3-approximation to the MW revenue under a data separation assumption. The second algorithm, OHAC, is an online counterpart to offline HAC, which is known to yield a 1/3-approximation to the MW revenue, and produce good quality clusters in practice. We show that OHAC approximates offline HAC by leveraging a novel split-merge procedure. We empirically show that OTD and OHAC offer significant efficiency and cluster quality gains respectively over baselines.
We present a hierarchical maximum-margin clustering method for unsupervised data analysis. Our method extends beyond flat maximum-margin clustering, and performs clustering recursively in a top-down manner. We propose an effective greedy splitting cr
iteria for selecting which cluster to split next, and employ regularizers that enforce feature sharing/competition for capturing data semantics. Experimental results obtained on four standard datasets show that our method outperforms flat and hierarchical clustering baselines, while forming clean and semantically meaningful cluster hierarchies.
We investigate active learning by pairwise similarity over the leaves of trees originating from hierarchical clustering procedures. In the realizable setting, we provide a full characterization of the number of queries needed to achieve perfect recon
struction of the tree cut. In the non-realizable setting, we rely on known important-sampling procedures to obtain regret and query complexity bounds. Our algorithms come with theoretical guarantees on the statistical error and, more importantly, lend themselves to linear-time implementations in the relevant parameters of the problem. We discuss such implementations, prove running time guarantees for them, and present preliminary experiments on real-world datasets showing the compelling practical performance of our algorithms as compared to both passive learning and simple active learning baselines.
Hierarchical clustering is a critical task in numerous domains. Many approaches are based on heuristics and the properties of the resulting clusterings are studied post hoc. However, in several applications, there is a natural cost function that can
be used to characterize the quality of the clustering. In those cases, hierarchical clustering can be seen as a combinatorial optimization problem. To that end, we introduce a new approach based on A* search. We overcome the prohibitively large search space by combining A* with a novel emph{trellis} data structure. This combination results in an exact algorithm that scales beyond previous state of the art, from a search space with $10^{12}$ trees to $10^{15}$ trees, and an approximate algorithm that improves over baselines, even in enormous search spaces that contain more than $10^{1000}$ trees. We empirically demonstrate that our method achieves substantially higher quality results than baselines for a particle physics use case and other clustering benchmarks. We describe how our method provides significantly improved theoretical bounds on the time and space complexity of A* for clustering.
الأسئلة المقترحة
سجل دخول لتتمكن من نشر تعليقات
التعليقات
جاري جلب التعليقات
سجل دخول لتتمكن من متابعة معايير البحث التي قمت باختيارها
