We present a detailed study of D-brane superpotentials depending on several open and closed-string deformations. The relative cohomology group associated with the brane defines a generalized hypergeometric GKZ system which determines the off-shell su
perpotential and its analytic properties under deformation. Explicit expressions for the N=1 superpotential for families of type II/F-theory compactifications are obtained for a list of multi-parameter examples. Using the Hodge theoretic approach to open-string mirror symmetry, we obtain new predictions for integral disc invariants in the A model instanton expansion. We study the behavior of the brane vacua under extremal transitions between different Calabi-Yau spaces and observe that the web of Calabi-Yau vacua remains connected for a particular class of branes.
We perform a Hodge theoretic study of parameter dependent families of D-branes on compact Calabi-Yau manifolds in type II and F-theory compactifcations. Starting from a geometric Gauss-Manin connection for B type branes we study the integrability and
flatness conditions. The B model geometry defines an interesting ring structure of operators. For the mirror A model this indicates the existence of an open-string extension of the so-called A model connection, whereas the discovered ring structure should be part of the open-string A model quantum cohomology. We obtain predictions for genuine Ooguri-Vafa invariants for Lagrangian branes on the quintic in P4 that pass some non-trivial consistency checks. We discuss the lift of the brane compactifications to F-theory on Calabi-Yau 4-folds and the effective couplings in the effective supergravity action as determined by the N = 1 special geometry of the open-closed deformation space.
