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We explore the utility of CI as an alternative high-fidelity gas mass tracer for Galactic molecular clouds. We evaluate the X$_{rm CI}$-factor for the 609 $mu$m carbon line, the analog of the CO X-factor, which is the ratio of the H$_2$ column densit y to the integrated $^{12}$CO(1-0) line intensity. We use 3D-PDR to post-process hydrodynamic simulations of turbulent, star-forming clouds. We compare the emission of CI and CO for model clouds irradiated by 1 and 10 times the average background and demonstrate that CI is a comparable or superior tracer of the molecular gas distribution for column densities up to $6 times 10^{23}$ cm$^{-2}$. Our results hold for both reduced and full chemical networks. For our fiducial Galactic cloud we derive an average $X_{rm CO}$ of $3.0times 10^{20}$ cm$^{-2}$K$^{-1}$km$^{-1}$s and $X_{rm CI}$ of $1.1times 10^{21}$ cm$^{-2}$K$^{-1}$km$^{-1}$s.
We use 3D-PDR, a three-dimensional astrochemistry code for modeling photodissociation regions (PDRs), to post-process hydrodynamic simulations of turbulent, star-forming clouds. We focus on the transition from atomic to molecular gas, with specific a ttention to the formation and distribution of H, C+, C, H2 and CO. First, we demonstrate that the details of the cloud chemistry and our conclusions are insensitive to the simulation spatial resolution, to the resolution at the cloud edge, and to the ray angular resolution. We then investigate the effect of geometry and simulation parameters on chemical abundances and find weak dependence on cloud morphology as dictated by gravity and turbulent Mach number. For a uniform external radiation field, we find similar distributions to those derived using a one-dimensional PDR code. However, we demonstrate that a three-dimensional treatment is necessary for a spatially varying external field, and we caution against using one-dimensional treatments for non-symmetric problems. We compare our results with the work of Glover et al. (2010), who self-consistently followed the time evolution of molecule formation in hydrodynamic simulations using a reduced chemical network. In general, we find good agreement with this in situ approach for C and CO abundances. However, the temperature and H2 abundances are discrepant in the boundary regions (Av < 5), which is due to the different number of rays used by the two approaches.
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