We construct a three-dimensional (3D), time-reversal symmetric generalization of the Chalker-Coddington network model for the integer quantum Hall transition. The novel feature of our network model is that in addition to a weak topological insulator
phase already accommodated by the network model framework in the pre-existing literature, it hosts strong topological insulator phases as well. We unambiguously demonstrate that strong topological insulator phases emerge as intermediate phases between a trivial insulator phase and a weak topological phase. Additionally, we found a non-local transformation that relates a trivial insulator phase and a weak topological phase in our network model. Remarkably, strong topological phases are mapped to themselves under this transformation. We show that upon adding sufficiently strong disorder the strong topological insulator phases undergo phase transitions into a metallic phase. We numerically determine the critical exponent of the insulator-metal transition. Our network model explicitly shows how a semi-classical percolation picture of topological phase transitions in 2D can be generalized to 3D and opens up a new venue for studying 3D topological phase transitions.
Quantitative analysis of cell nuclei in microscopic images is an essential yet challenging source of biological and pathological information. The major challenge is accurate detection and segmentation of densely packed nuclei in images acquired under
a variety of conditions. Mask R-CNN-based methods have achieved state-of-the-art nucleus segmentation. However, the current pipeline requires fully annotated training images, which are time consuming to create and sometimes noisy. Importantly, nuclei often appear similar within the same image. This similarity could be utilized to segment nuclei with only partially labeled training examples. We propose a simple yet effective region-proposal module for the current Mask R-CNN pipeline to perform few-exemplar learning. To capture the similarities between unlabeled regions and labeled nuclei, we apply decomposed self-attention to learned features. On the self-attention map, we observe strong activation at the centers and edges of all nuclei, including unlabeled nuclei. On this basis, our region-proposal module propagates partial annotations to the whole image and proposes effective bounding boxes for the bounding box-regression and binary mask-generation modules. Our method effectively learns from unlabeled regions thereby improving detection performance. We test our method with various nuclear images. When trained with only 1/4 of the nuclei annotated, our approach retains a detection accuracy comparable to that from training with fully annotated data. Moreover, our method can serve as a bootstrapping step to create full annotations of datasets, iteratively generating and correcting annotations until a predetermined coverage and accuracy are reached. The source code is available at https://github.com/feng-lab/nuclei.
Inspired by a recently constructed commuting-projector Hamiltonian for a two-dimensional (2D) time-reversal-invariant topological superconductor [Wang et al., Phys. Rev. B 98, 094502 (2018)], we introduce a commuting-projector model that describes an
interacting yet exactly solvable 2D topological insulator. We explicitly show that both the gapped and gapless boundaries of our model are consistent with those of band-theoretic, weakly interacting topological insulators. Interestingly, on certain lattices our time-reversal-symmetric models also enjoy $mathcal{CP}$ symmetry, leading to intuitive interpretations of the bulk invariant for a $mathcal{CP}$-symmetric topological insulator upon putting the system on a Klein bottle. We also briefly discuss how these many-body invariants may be able to characterize models with only time-reversal symmetry.
We introduce a family of commuting-projector Hamiltonians whose degrees of freedom involve $mathbb{Z}_{3}$ parafermion zero modes residing in a parent fractional-quantum-Hall fluid. The two simplest models in this family emerge from dressing Ising-pa
ramagnet and toric-code spin models with parafermions; we study their edge properties, anyonic excitations, and ground-state degeneracy. We show that the first model realizes a symmetry-enriched topological phase (SET) for which $mathbb{Z}_2$ spin-flip symmetry from the Ising paramagnet permutes the anyons. Interestingly, the interface between this SET and the parent quantum-Hall phase realizes symmetry-enforced $mathbb{Z}_3$ parafermion criticality with no fine-tuning required. The second model exhibits a non-Abelian phase that is consistent with $text{SU}(2)_{4}$ topological order, and can be accessed by gauging the $mathbb{Z}_{2}$ symmetry in the SET. Employing Levin-Wen string-net models with $mathbb{Z}_{2}$-graded structure, we generalize this picture to construct a large class of commuting-projector models for $mathbb{Z}_{2}$ SETs and non-Abelian topological orders exhibiting the same relation. Our construction provides the first commuting-projector-Hamiltonian realization of chiral bosonic non-Abelian topological order.
The idea of statistical transmutation plays a crucial role in descriptions of the fractional quantum Hall effect. However, a recently conjectured duality between a critical boson and a massless 2-component Dirac fermion extends this notion to gapless
systems. This duality sheds light on highly non-trivial problems such as the half-filled Landau level, the superconductor-insulator transition, and surface states of strongly coupled topological insulators. Although this boson-fermion duality has undergone many consistency checks, it has remained unproven. We describe the duality in a non-perturbative fashion using an exact UV mapping of partition functions on a 3D Euclidean lattice.
Dimer models have long been a fruitful playground for understanding topological physics. Here we introduce a new class - termed Majorana-dimer models - wherein bosonic dimers are decorated with pairs of Majorana modes. We find that the simplest examp
les of such systems realize an intriguing, intrinsically fermionic phase of matter that can be viewed as the product of a chiral Ising theory, which hosts deconfined non-Abelian quasiparticles, and a topological $p_x - ip_y$ superconductor. While the bulk anyons are described by a single copy of the Ising theory, the edge remains fully gapped. Consequently, this phase can arise in exactly solvable, frustration-free models. We describe two parent Hamiltonians: one generalizes the well-known dimer model on the triangular lattice, while the other is most naturally understood as a model of decorated fluctuating loops on a honeycomb lattice. Using modular transformations, we show that the ground-state manifold of the latter model unambiguously exhibits all properties of the $text{Ising} times (p_x-ip_y)$ theory. We also discuss generalizations with more than one Majorana mode per site, which realize phases related to Kitaevs 16-fold way in a similar fashion.
