Direct imaging observations have revealed spiral structures in protoplanetary disks. Previous studies have suggested that planet-induced spiral arms cannot explain some of these spiral patterns, due to the large pitch angle and high contrast of the s
piral arms in observations. We have carried out three dimensional (3-D) hydrodynamical simulations to study spiral wakes/shocks excited by young planets. We find that, in contrast with linear theory, the pitch angle of spiral arms does depend on the planet mass, which can be explained by the non-linear density wave theory. A secondary (or even a tertiary) spiral arm, especially for inner arms, is also excited by a massive planet. With a more massive planet in the disk, the excited spiral arms have larger pitch angle and the separation between the primary and secondary arms in the azimuthal direction is also larger. We also find that although the arms in the outer disk do not exhibit much vertical motion, the inner arms have significant vertical motion, which boosts the density perturbation at the disk atmosphere. Combining hydrodynamical models with Monte-Carlo radiative transfer calculations, we find that the inner spiral arms are considerably more prominent in synthetic near-IR images using full 3-D hydrodynamical models than images based on 2-D models assuming vertical hydrostatic equilibrium, indicating the need to model observations with full 3-D hydrodynamics. Overall, companion-induced spiral arms not only pinpoint the companions position but also provide three independent ways (pitch angle, separation between two arms, and contrast of arms) to constrain the companions mass.
Accretion disks are likely threaded by external vertical magnetic flux, which enhances the level of turbulence via the magnetorotational instability (MRI). Using shearing-box simulations, we find that such external magnetic flux also strongly enhance
s the amplitude of banded radial density variations known as zonal flows. Moreover, we report that vertical magnetic flux is strongly concentrated toward low-density regions of the zonal flow. Mean vertical magnetic field can be more than doubled in low-density regions, and reduced to nearly zero in high density regions in some cases. In ideal MHD, the scale on which magnetic flux concentrates can reach a few disk scale heights. In the non-ideal MHD regime with strong ambipolar diffusion, magnetic flux is concentrated into thin axisymmetric shells at some enhanced level, whose size is typically less than half a scale height. We show that magnetic flux concentration is closely related to the fact that the magnetic diffusivity of the MRI turbulence is anisotropic. In addition to a conventional Ohmic-like turbulent resistivity, we find that there is a correlation between the vertical velocity and horizontal magnetic field fluctuations that produces a mean electric field that acts to anti-diffuse the vertical magnetic flux. The anisotropic turbulent diffusivity has analogies to the Hall effect, and may have important implications for magnetic flux transport in accretion disks. The physical origin of magnetic flux concentration may be related to the development of channel flows followed by magnetic reconnection, which acts to decrease the mass-to-flux ratio in localized regions. The association of enhanced zonal flows with magnetic flux concentration may lead to global pressure bumps in protoplanetary disks that helps trap dust particles and facilitates planet formation.
We study dust transport in turbulent protoplanetary disks using three-dimensional global unstratified magnetohydrodynamic (MHD) simulations including Lagrangian dust particles. The turbulence is driven by the magnetorotational instability (MRI) with
either ideal or non-ideal MHD that includes ambipolar diffusion (AD). In ideal MHD simulations, the surface density evolution (except for dust that drifts fastest), turbulent diffusion, and vertical scale height of dust can all be reproduced by simple one-dimensoinal and/or analytical models. However, in AD dominated simulations which simulate protoplanetary disks beyond 10s of AU, the vertical scale height of dust is larger than previously predicted. To understand this anomaly in more detail, we carry out both unstratified and stratified local shearing box simulations with Lagrangian particles, and find that turbulence in AD dominated disks has very different properties (e.g., temporal autocorrelation functions and power spectra) than turbulence in ideal MHD disks, which leads to quite different particle diffusion efficiency. For example, MRI turbulence with AD has a longer correlation time for the vertical velocity, which causes significant vertical particle diffusion and large dust scale height. In ideal MHD the Schmidt numbers ($Sc$) for radial and vertical turbulent diffusion are $Sc_{r}sim 1$ and $Sc_{z}gtrsim 3$, but in the AD dominated regime both $Sc_{r}$ and $Sc_{z}$ are $lesssim 1$. Particle concentration in pressure bumps induced by MRI turbulence has also been studied. Since non-ideal MHD effects dominate most regions in protoplanetary disks, our study suggests that modeling dust transport in turbulence driven by MRI with non-ideal MHD effects is important for understanding dust transport in realistic protoplanetary disks.
Hybrid-kinetic numerical simulations of firehose and mirror instabilities in a collisionless plasma are performed in which pressure anisotropy is driven as the magnetic field is changed by a persistent linear shear $S$. For a decreasing field, it is
found that mostly oblique firehose fluctuations grow at ion Larmor scales and saturate with energies $sim$$S^{1/2}$; the pressure anisotropy is pinned at the stability threshold by particle scattering off microscale fluctuations. In contrast, nonlinear mirror fluctuations are large compared to the ion Larmor scale and grow secularly in time; marginality is maintained by an increasing population of resonant particles trapped in magnetic mirrors. After one shear time, saturated order-unity magnetic mirrors are formed and particles scatter off their sharp edges. Both instabilities drive sub-ion-Larmor--scale fluctuations, which appear to be kinetic-Alfv{e}n-wave turbulence. Our results impact theories of momentum and heat transport in astrophysical and space plasmas, in which the stretching of a magnetic field by shear is a generic process.
We describe Pegasus, a new hybrid-kinetic particle-in-cell code tailored for the study of astrophysical plasma dynamics. The code incorporates an energy-conserving particle integrator into a stable, second-order--accurate, three-stage predictor-predi
ctor-corrector integration algorithm. The constrained transport method is used to enforce the divergence-free constraint on the magnetic field. A delta-f scheme is included to facilitate a reduced-noise study of systems in which only small departures from an initial distribution function are anticipated. The effects of rotation and shear are implemented through the shearing-sheet formalism with orbital advection. These algorithms are embedded within an architecture similar to that used in the popular astrophysical magnetohydrodynamics code Athena, one that is modular, well-documented, easy to use, and efficiently parallelized for use on thousands of processors. We present a series of tests in one, two, and three spatial dimensions that demonstrate the fidelity and versatility of the code.
We perform a systematic study of the dynamics of dust particles in protoplanetary disks with embedded planets using global 2-D and 3-D inviscid hydrodynamic simulations. Lagrangian particles have been implemented into magnetohydrodynamic code Athena
with cylindrical coordinates. We find two distinct outcomes depending on the mass of the embedded planet. In the presence of a low mass planet ($8 M_{oplus}$), two narrow gaps start to open in the gas on each side of the planet where the density waves shock. These shallow gaps can dramatically affect particle drift speed and cause significant, roughly axisymmetric dust depletion. On the other hand, a more massive planet ($>0.1 M_{J}$) carves out a deeper gap with sharp edges, which are unstable to the vortex formation. Particles with a wide range of sizes ($0.02<Omega t_{s}<20$) are trapped and settle to the midplane in the vortex, with the strongest concentration for particles with $Omega t_{s}sim 1$. The dust concentration is highly elongated in the $phi$ direction, and can be as wide as 4 disk scale heights in the radial direction. Dust surface density inside the vortex can be increased by more than a factor of 10$^2$ in a very non-axisymmetric fashion. For very big particles ($Omega t_{s}gg 1$) we find strong eccentricity excitation, in particular around the planet and in the vicinity of the mean motion resonances, facilitating gap opening there. Our results imply that in weakly turbulent protoplanetary disk regions (e.g. the dead zone) dust particles with a very wide range of sizes can be trapped at gap edges and inside vortices induced by planets with $M_{p}<M_{J}$, potentially accelerating planetesimal and planet formation there, and giving rise to distinctive features that can be probed by ALMA and EVLA.
We study wakes and gap opening by low mass planets in gaseous protoplanetary disks threaded by net vertical magnetic fields which drive magnetohydrodynamical (MHD) turbulence through the magnetorotational instabilty (MRI), using three dimensional sim
ulations in the unstratified local shearing box approximation. The wakes, which are excited by the planets, are damped by shocks similar to the wake damping in inviscid hydrodynamic (HD) disks. Angular momentum deposition by shock damping opens gaps in both MHD turbulent disks and inviscid HD disks even for low mass planets, in contradiction to the thermal criterion for gap opening. To test the viscous criterion, we compared gap properties in MRI-turbulent disks to those in viscous HD disks having the same stress, and found that the same mass planet opens a significantly deeper and wider gap in net vertical flux MHD disks than in viscous HD disks. This difference arises due to the efficient magnetic field transport into the gap region in MRI disks, leading to a larger effective alpha within the gap. Thus, across the gap, the Maxwell stress profile is smoother than the gap density profile, and a deeper gap is needed for the Maxwell stress gradient to balance the planetary torque density. We also confirmed the large excess torque close to the planet in MHD disks, and found that long-lived density features (termed zonal flows) produced by the MRI can affect planet migration. The comparison with previous results from net toroidal flux/zero flux MHD simulations indicates that the magnetic field geometry plays an important role in the gap opening process. Overall, our results suggest that gaps can be commonly produced by low mass planets in realistic protoplanetary disks, and caution the use of a constant alpha-viscosity to model gaps in protoplanetary disks.
We perform 3D vertically-stratified local shearing-box ideal MHD simulations of the magnetorotational instability (MRI) that include a net vertical magnetic flux, which is characterized by beta_0 (ratio of gas pressure to magnetic pressure of the net
vertical field at midplane). We have considered beta_0=10^2, 10^3 and 10^4 and in the first two cases the most unstable linear MRI modes are well resolved in the simulations. We find that the behavior of the MRI turbulence strongly depends on beta_0: The radial transport of angular momentum increases with net vertical flux, achieving alpha=0.08 for beta_0=10^4 and alpha>1.0 for beta_0=100, where alpha is the Shakura-Sunyaev parameter. A critical value lies at beta_0=10^3: For beta_0>10^3, the disk consists of a gas pressure dominated midplane and a magnetically dominated corona. The turbulent strength increases with net flux, and angular momentum transport is dominated by turbulent fluctuations. The magnetic dynamo that leads to cyclic flips of large-scale fields still exists, but becomes more sporadic as net flux increases. For beta_0<10^3, the entire disk becomes magnetic dominated. The turbulent strength saturates, and the magnetic dynamo is quenched. Stronger large-scale fields are generated with increasing net flux, which dominates angular momentum transport. A strong outflow is launched from the disk by the magnetocentrifugal mechanism, and the mass flux increases linearly with net vertical flux and shows sign of saturation at beta_0=10^2. However, the outflow is unlikely to be directly connected to a global wind: for beta_0>10^3, the large-scale field has no permanent bending direction due to dynamo activities, while for beta_0<10^3, the outflows from the top and bottom sides of the disk bend towards opposite directions, inconsistent with a physical disk wind geometry. Global simulations are needed to address the fate of the outflow.
We carry out local three dimensional (3D) hydrodynamic simulations of planet-disk interaction in stratified disks with varied thermodynamic properties. We find that whenever the Brunt-Vaisala frequency (N) in the disk is nonzero, the planet exerts a
strong torque on the disk in the vicinity of the planet, with a reduction in the traditional torque cutoff. In particular, this is true for adiabatic perturbations in disks with isothermal density structure, as should be typical for centrally irradiated protoplanetary disks. We identify this torque with buoyancy waves, which are excited (when N is non-zero) close to the planet, within one disk scale height from its orbit. These waves give rise to density perturbations with a characteristic 3D spatial pattern which is in close agreement with the linear dispersion relation for buoyancy waves. The torque due to these waves can amount to as much as several tens of per cent of the total planetary torque, which is not expected based on analytical calculations limited to axisymmetric or low-m modes. Buoyancy waves should be ubiquitous around planets in the inner, dense regions of protoplanetary disks, where they might possibly affect planet migration.
Thermal instability (TI) can strongly affect the structure and dynamics of the interstellar medium (ISM) in the Milky Way and other disk galaxies. Thermal conduction plays an important role in the TI by stabilizing small scales and limiting the size
of the smallest condensates. In the magnetized ISM, however, heat is conducted anisotropically (primarily along magnetic field lines). We investigate the effects of anisotropic thermal conduction on the nonlinear regime of the TI by performing two-dimensional magnetohydrodynamic simulations. We present models with magnetic fields of different initial geometries and strengths, and compare them to hydrodynamic models with isotropic conduction. We find anisotropic conduction does not significantly alter the overall density and temperature statistics in the saturated state of the TI. However, it can strongly affect the shapes and sizes of cold clouds formed by the TI. For example, for uniform initial fields long filaments of cold gas are produced that are reminiscent of some observed HI clouds. For initially tangled fields, such filaments are not produced. We also show that anisotropic conduction suppresses turbulence generated by evaporative flows from the surfaces of cold blobs, which may have implications for mechanisms for driving turbulence in the ISM.
