This work presents a detailed characterisation of the MAST Scrape Off Layer in L-mode. Scans in line averaged density, plasma current and toroidal magnetic field were performed. A comprehensive and integrated study of the SOL was allowed by the use o
f a wide range of diagnostics. In agreement with previous results, an increase of the line averaged density induced a broadening of the midplane density profile.
The application of resonant magnetic perturbations (RMPs) with a toroidal mode number of n=4 or n=6 to lower single null plasmas in the MAST tokamak produces up to a factor of 5 increase in Edge Localized Mode (ELM) frequency and reduction in plasma
energy loss associated with type-I ELMs. A threshold current for ELM mitigation is observed above which the ELM frequency increases approximately linearly with current in the coils. Despite a large scan of parameters, complete ELM suppression has not been achieved. The results have been compared to modelling performed using either the vacuum approximation or including the plasma response. During the ELM mitigated stage clear lobe structures are observed in visible-light imaging of the X-point region. The size of these lobes is correlated with the increase in ELM frequency observed. The characteristics of the mitigated ELMs are similar to those of the natural ELMs suggesting that they are type I ELMs which are triggered at a lower pressure gradient. The application of the RMPs in the n=4 and n=6 configurations before the L-H transition has little effect on the power required to achieve H-mode while still allowing the first ELM to be mitigated.
The application of non-axisymmetric resonant magnetic perturbations (RMPs) with a toroidal mode number n=6 in the MAST tokamak produces a significant reduction in plasma energy loss associated with type-I Edge Localized Modes (ELMs), the first such o
bservation with n>3. During the ELM mitigated stage clear lobe structures are observed in visible-light imaging of the X-point region. These lobes or manifold structures, that were predicted previously, have been observed for the first time in a range of discharges and their appearance is correlated with the effect of RMPs on the plasma i.e. they only appear above a threshold when a density pump out is observed or when the ELM frequency is increased. They appear to be correlated with the RMPs penetrating the plasma and may be important in explaining why the ELM frequency increases. The number and location of the structures observed can be well described using vacuum modelling. Differences in radial extent and poloidal width from vacuum modelling are likely to be due to a combination of transport effects and plasma screening.
The role of thermal pressure fluctuation excited within tightly packaged DNA prior to ejection from protein capsid shells is discussed in a model calculation. At equilibrium before ejection we assume the DNA is folded many times into a bundle of para
llel segments that forms an equilibrium conformation at minimum free energy, which presses tightly against internal capsid walls. Using a canonical ensemble at temperature T we calculate internal pressure fluctuations against a slowly moving or static capsid mantle for an elastic continuum model of the folded DNA bundle. It is found that fluctuating pressure on the capsid internal wall from thermal excitation of longitudinal acoustic vibrations in the bundle may have root-mean-square values which are several tens of atmospheres for typically small phage dimensions. Comparisons are given with measured data on three mutants of lambda phage with different base pair lengths and total genome ejection pressures.
