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Register a new userLife is physics: evolution as a collective phenomenon far from equilibrium
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Evolution is the fundamental physical process that gives rise to biological phenomena. Yet it is widely treated as a subset of population genetics, and thus its scope is artificially limited. As a result, the key issues of how rapidly evolution occurs, and its coupling to ecology have not been satisfactorily addressed and formulated. The lack of widespread appreciation for, and understanding of, the evolutionary process has arguably retarded the development of biology as a science, with disastrous consequences for its applications to medicine, ecology and the global environment. This review focuses on evolution as a problem in non-equilibrium statistical mechanics, where the key dynamical modes are collective, as evidenced by the plethora of mobile genetic elements whose role in shaping evolution has been revealed by modern genomic surveys. We discuss how condensed matter physics concepts might provide a useful perspective in evolutionary biology, the conceptual failings of the modern evolutionary synthesis, the open-ended growth of complexity, and the quintessentially self-referential nature of evolutionary dynamics.
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Biological systems are typically highly open, non-equilibrium systems that are very challenging to understand from a statistical mechanics perspective. While statistical treatments of evolutionary biological systems have a long and rich history, examination of the time-dependent non-equilibrium dynamics has been less studied. In this paper we first derive a generalized master equation in the genotype space for diploid organisms incorporating the processes of selection, mutation, recombination, and reproduction. The master equation is defined in terms of continuous time and can handle an arbitrary number of gene loci and alleles, and can be defined in terms of an absolute population or probabilities. We examine and analytically solve several prototypical cases which illustrate the interplay of the various processes and discuss the timescales of their evolution. The entropy production during the evolution towards steady state is calculated and we find that it agrees with predictions from non-equilibrium statistical mechanics where it is large when the population distribution evolves towards a more viable genotype. The stability of the non-equilibrium steady state is confirmed using the Glansdorff-Prigogine criterion.
The origins of life stands among the great open scientific questions of our time. While a number of proposals exist for possible starting points in the pathway from non-living to living matter, these have so far not achieved states of complexity that are anywhere near that of even the simplest living systems. A key challenge is identifying the properties of living matter that might distinguish living and non-living physical systems such that we might build new life in the lab. This review is geared towards covering major viewpoints on the origin of life for those new to the origin of life field, with a forward look towards considering what it might take for a physical theory that universally explains the phenomenon of life to arise from the seemingly disconnected array of ideas proposed thus far. The hope is that a theory akin to our other theories in fundamental physics might one day emerge to explain the phenomenon of life, and in turn finally permit solving its origins.
Numerical models indicate that collective animal behaviour may emerge from simple local rules of interaction among the individuals. However, very little is known about the nature of such interaction, so that models and theories mostly rely on aprioristic assumptions. By reconstructing the three-dimensional position of individual birds in airborne flocks of few thousands members, we prove that the interaction does not depend on the metric distance, as most current models and theories assume, but rather on the topological distance. In fact, we discover that each bird interacts on average with a fixed number of neighbours (six-seven), rather than with all neighbours within a fixed metric distance. We argue that a topological interaction is indispensable to maintain flocks cohesion against the large density changes caused by external perturbations, typically predation. We support this hypothesis by numerical simulations, showing that a topological interaction grants significantly higher cohesion of the aggregation compared to a standard metric one.
We propose a mathematical model for collective sensing in a population growing in a stochastically varying environment. In the population, individuals use an information channel for sensing the environment, and two channels for signal production and comprehension to communicate among themselves. We show that existence of such system has a positive effect on population growth, hence can have a positive evolutionary effect. We show that the gain in growth due to the collective sensing is related to information theoretic entities, which can be considered as the information content of this system from the environment. We further show that heterogeneity in communication resulted from network or spatial structure increases growth. We compute the growth rate of a population residing on a lattice and show that growth rate near the maximum noise level in observation or communication, increases exponentially as noise decreases. This exponential effect makes the emergence of collective observation an easy outcome in an evolutionary process. Furthermore, we are able to quantify interesting effects such as accelerated growth, and simplification of decision making due to information amplification by communication. Finally, we show that an amount of noise in representation formation has more disadvantageous effect compared to the same noise in signal production.
We analyze the jamming transition that occurs as a function of increasing packing density in a disordered two-dimensional assembly of disks at zero temperature for ``Point J of the recently proposed jamming phase diagram. We measure the total number of moving disks and the transverse length of the moving region, and find a power law divergence as the packing density increases toward a critical jamming density. This provides evidence that the T = 0 jamming transition as a function of packing density is a {it second order} phase transition. Additionally we find evidence for multiscaling, indicating the importance of long tails in the velocity fluctuations.
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