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Register a new userA Novel Multi-Centroid Template Matching Algorithm and Its Application to Cough Detection
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Added by
Shibo Zhang
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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Cough is a major symptom of respiratory-related diseases. There exists a tremendous amount of work in detecting coughs from audio but there has been no effort to identify coughs from solely inertial measurement unit (IMU). Coughing causes motion across the whole body and especially on the neck and head. Therefore, head motion data during coughing captured by a head-worn IMU sensor could be leveraged to detect coughs using a template matching algorithm. In time series template matching problems, K-Nearest Neighbors (KNN) combined with elastic distance measurement (esp. Dynamic Time Warping (DTW)) achieves outstanding performance. However, it is often regarded as prohibitively time-consuming. Nearest Centroid Classifier is thereafter proposed. But the accuracy is comprised of only one centroid obtained for each class. Centroid-based Classifier performs clustering and averaging for each cluster, but requires manually setting the number of clusters. We propose a novel self-tuning multi-centroid template-matching algorithm, which can automatically adjust the number of clusters to balance accuracy and inference time. Through experiments conducted on synthetic datasets and a real-world earbud-based cough dataset, we demonstrate the superiority of our proposed algorithm and present the result of cough detection with a single accelerometer sensor on the earbuds platform.
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We present an automatic non-invasive way of detecting cough events based on both accelerometer and audio signals. The acceleration signals are captured by a smartphone firmly attached to the patients bed, using its integrated accelerometer. The audio signals are captured simultaneously by the same smartphone using an external microphone. We have compiled a manually-annotated dataset containing such simultaneously-captured acceleration and audio signals for approximately 6000 cough and 68000 non-cough events from 14 adult male patients in a tuberculosis clinic. LR, SVM and MLP are evaluated as baseline classifiers and compared with deep architectures such as CNN, LSTM, and Resnet50 using a leave-one-out cross-validation scheme. We find that the studied classifiers can use either acceleration or audio signals to distinguish between coughing and other activities including sneezing, throat-clearing, and movement on the bed with high accuracy. However, in all cases, the deep neural networks outperform the shallow classifiers by a clear margin and the Resnet50 offers the best performance by achieving an AUC exceeding 0.98 and 0.99 for acceleration and audio signals respectively. While audio-based classification consistently offers a better performance than acceleration-based classification, we observe that the difference is very small for the best systems. Since the acceleration signal requires less processing power, and since the need to record audio is sidestepped and thus privacy is inherently secured, and since the recording device is attached to the bed and not worn, an accelerometer-based highly accurate non-invasive cough detector may represent a more convenient and readily accepted method in long-term cough monitoring.
Cough is one of the most common symptoms in all respiratory diseases. In cases like Chronic Obstructive Pulmonary Disease, Asthma, acute and chronic Bronchitis and the recent pandemic Covid-19, the early identification of cough is important to provide healthcare professionals with useful clinical information such as frequency, severity, and nature of cough to enable better diagnosis. This paper presents and demonstrates best feature selection using MFCC which can help to determine cough events, eventually helping a neural network to learn and improve accuracy of cough detection. The paper proposes to achieve performance of 97.77% Sensitivity (SE), 98.75% Specificity (SP) and 98.17% F1-score with a very light binary classification network of size close to 16K parameters, enabling fitment into smart IoT devices.
Cough is a common symptom of respiratory and lung diseases. Cough detection is important to prevent, assess and control epidemic, such as COVID-19. This paper proposes a model to detect cough events from cough audio signals. The models are trained by the dataset combined ESC-50 dataset with self-recorded cough recordings. The test dataset contains inpatient cough recordings collected from inpatients of the respiratory disease department in Ruijin Hospital. We totally build 15 cough detection models based on different feature numbers selected by Random Frog, Uninformative Variable Elimination (UVE), and Variable influence on projection (VIP) algorithms respectively. The optimal model is based on 20 features selected from Mel Frequency Cepstral Coefficients (MFCC) features by UVE algorithm and classified with Support Vector Machine (SVM) linear two-class classifier. The best cough detection model realizes the accuracy, recall, precision and F1-score with 94.9%, 97.1%, 93.1% and 0.95 respectively. Its excellent performance with fewer dimensionality of the feature vector shows the potential of being applied to mobile devices, such as smartphones, thus making cough detection remote and non-contact.
In the break of COVID-19 pandemic, mass testing has become essential to reduce the spread of the virus. Several recent studies suggest that a significant number of COVID-19 patients display no physical symptoms whatsoever. Therefore, it is unlikely that these patients will undergo COVID-19 test, which increases their chances of unintentionally spreading the virus. Currently, the primary diagnostic tool to detect COVID-19 is RT-PCR test on collected respiratory specimens from the suspected case. This requires patients to travel to a laboratory facility to be tested, thereby potentially infecting others along the way.It is evident from recent researches that asymptomatic COVID-19 patients cough and breath in a different way than the healthy people. Several research groups have created mobile and web-platform for crowdsourcing the symptoms, cough and breathing sounds from healthy, COVID-19 and Non-COVID patients. Some of these data repositories were made public. We have received such a repository from Cambridge University team under data-sharing agreement, where we have cough and breathing sound samples for 582 and 141 healthy and COVID-19 patients, respectively. 87 COVID-19 patients were asymptomatic, while rest of them have cough. We have developed an Android application to automatically screen COVID-19 from the comfort of people homes. Test subjects can simply download a mobile application, enter their symptoms, record an audio clip of their cough and breath, and upload the data anonymously to our servers. Our backend server converts the audio clip to spectrogram and then apply our state-of-the-art machine learning model to classify between cough sounds produced by COVID-19 patients, as opposed to healthy subjects or those with other respiratory conditions. The system can detect asymptomatic COVID-19 patients with a sensitivity more than 91%.
Matching is a task at the heart of any data integration process, aimed at identifying correspondences among data elements. Matching problems were traditionally solved in a semi-automatic manner, with correspondences being generated by matching algorithms and outcomes subsequently validated by human experts. Human-in-the-loop data integration has been recently challenged by the introduction of big data and recent studies have analyzed obstacles to effective human matching and validation. In this work we characterize human matching experts, those humans whose proposed correspondences can mostly be trusted to be valid. We provide a novel framework for characterizing matching experts that, accompanied with a novel set of features, can be used to identify reliable and valuable human experts. We demonstrate the usefulness of our approach using an extensive empirical evaluation. In particular, we show that our approach can improve matching results by filtering out inexpert matchers.
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