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This paper proposes a new two-stage network mediation method based on the use of a latent network approach -- model-based eigenvalue decomposition -- for analyzing social network data with nodal covariates. In the decomposition stage of the observed network, no assumption on the metric of the latent space structure is required. In the mediation stage, the most important eigenvectors of a network are used as mediators. This method further offers an innovative way for controlling for the conditional covariates and it only considers the information left in the network. We demonstrate this approach in a detailed tutorial R code provided for four separate cases -- unconditional and conditional model-based eigenvalue decompositions for either a continuous outcome or a binary outcome -- to show its applicability to empirical network data.
Causal variance decompositions for a given disease-specific quality indicator can be used to quantify differences in performance between hospitals or health care providers. While variance decompositions can demonstrate variation in quality of care, causal mediation analysis can be used to study care pathways leading to the differences in performance between the institutions. This raises the question of whether the two approaches can be combined to decompose between-hospital variation in an outcome type indicator to that mediated through a given process (indirect effect) and remaining variation due to all other pathways (direct effect). For this purpose, we derive a causal mediation analysis decomposition of between-hospital variance, discuss its interpretation, and propose an estimation approach based on generalized linear mixed models for the outcome and the mediator. We study the performance of the estimators in a simulation study and demonstrate its use in administrative data on kidney cancer care in Ontario.
In a network meta-analysis, some of the collected studies may deviate markedly from the others, for example having very unusual effect sizes. These deviating studies can be regarded as outlying with respect to the rest of the network and can be influential on the pooled results. Thus, it could be inappropriate to synthesize those studies without further investigation. In this paper, we propose two Bayesian methods to detect outliers in a network meta-analysis via: (a) a mean-shifted outlier model and (b), posterior predictive p-values constructed from ad-hoc discrepancy measures. The former method uses Bayes factors to formally test each study against outliers while the latter provides a score of outlyingness for each study in the network, which allows to numerically quantify the uncertainty associated with being outlier. Furthermore, we present a simple method based on informative priors as part of the network meta-analysis model to down-weight the detected outliers. We conduct extensive simulations to evaluate the effectiveness of the proposed methodology while comparing it to some alternative, available outlier diagnostic tools. Two real networks of interventions are then used to demonstrate our methods in practice.
Quadratic Unconstrained Binary Optimization (QUBO) is a general-purpose modeling framework for combinatorial optimization problems and is a requirement for quantum annealers. This paper utilizes the eigenvalue decomposition of the underlying Q matrix to alter and improve the search process by extracting the information from dominant eigenvalues and eigenvectors to implicitly guide the search towards promising areas of the solution landscape. Computational results on benchmark datasets illustrate the efficacy of our routine demonstrating significant performance improvements on problems with dominant eigenvalues.
Judea Pearls insight that, when errors are assumed independent, the Pure (aka Natural) Direct Effect (PDE) is non-parametrically identified via the Mediation Formula was `path-breaking in more than one sense! In the same paper Pearl described a thought-experiment as a way to motivate the PDE. Analysis of this experiment led Robins & Richardson to a novel way of conceptualizing direct effects in terms of interventions on an expanded graph in which treatment is decomposed into multiple separable components. We further develop this novel theory here, showing that it provides a self-contained framework for discussing mediation without reference to cross-world (nested) counterfactuals or interventions on the mediator. The theory preserves the dictum `no causation without manipulation and makes questions of mediation empirically testable in future Randomized Controlled Trials. Even so, we prove the interventionist and nested counterfactual approaches remain tightly coupled under a Non-Parametric Structural Equation Model except in the presence of a `recanting witness. In fact, our analysis also leads to a simple sound and complete algorithm for determining identification in the (non-interventionist) theory of path-specific counterfactuals.
Greater understanding of the pathways through which an environmental mixture operates is important to design effective interventions. We present new methodology to estimate the natural direct effect (NDE), natural indirect effect (NIE), and controlled direct effects (CDEs) of a complex mixture exposure on an outcome through a mediator variable. We implement Bayesian Kernel Machine Regression (BKMR) to allow for all possible interactions and nonlinear effects of 1) the co-exposures on the mediator, 2) the co-exposures and mediator on the outcome, and 3) selected covariates on the mediator and/or outcome. From the posterior predictive distributions of the mediator and outcome, we simulate counterfactuals to obtain posterior samples, estimates, and credible intervals of the mediation effects. Our simulation study demonstrates that when the exposure-mediator and exposure-mediator-outcome relationships are complex, BKMR-Causal Mediation Analysis performs better than current mediation methods. We applied our methodology to quantify the contribution of birth length as a mediator between in utero co-exposure to arsenic, manganese and lead, and childrens neurodevelopmental scores, in a prospective birth cohort in Bangladesh. Among younger children, we found a negative association between the metal mixture and neurodevelopment. We also found evidence that birth length mediates the effect of exposure to the metal mixture on neurodevelopment for younger children. If birth length were fixed to its $75^{th}$ percentile value, the effect of the metal mixture on neurodevelopment decreases, suggesting that nutritional interventions to help increase birth length could potentially block the harmful effects of the metal mixture on neurodevelopment.