No Arabic abstract
In sparse principal component analysis we are given noisy observations of a low-rank matrix of dimension $ntimes p$ and seek to reconstruct it under additional sparsity assumptions. In particular, we assume here each of the principal components $mathbf{v}_1,dots,mathbf{v}_r$ has at most $s_0$ non-zero entries. We are particularly interested in the high dimensional regime wherein $p$ is comparable to, or even much larger than $n$. In an influential paper, cite{johnstone2004sparse} introduced a simple algorithm that estimates the support of the principal vectors $mathbf{v}_1,dots,mathbf{v}_r$ by the largest entries in the diagonal of the empirical covariance. This method can be shown to identify the correct support with high probability if $s_0le K_1sqrt{n/log p}$, and to fail with high probability if $s_0ge K_2 sqrt{n/log p}$ for two constants $0<K_1,K_2<infty$. Despite a considerable amount of work over the last ten years, no practical algorithm exists with provably better support recovery guarantees. Here we analyze a covariance thresholding algorithm that was recently proposed by cite{KrauthgamerSPCA}. On the basis of numerical simulations (for the rank-one case), these authors conjectured that covariance thresholding correctly recover the support with high probability for $s_0le Ksqrt{n}$ (assuming $n$ of the same order as $p$). We prove this conjecture, and in fact establish a more general guarantee including higher-rank as well as $n$ much smaller than $p$. Recent lower bounds cite{berthet2013computational, ma2015sum} suggest that no polynomial time algorithm can do significantly better. The key technical component of our analysis develops new bounds on the norm of kernel random matrices, in regimes that were not considered before.
We consider testing the equality of two high-dimensional covariance matrices by carrying out a multi-level thresholding procedure, which is designed to detect sparse and faint differences between the covariances. A novel U-statistic composition is developed to establish the asymptotic distribution of the thresholding statistics in conjunction with the matrix blocking and the coupling techniques. We propose a multi-thresholding test that is shown to be powerful in detecting sparse and weak differences between two covariance matrices. The test is shown to have attractive detection boundary and to attain the optimal minimax rate in the signal strength under different regimes of high dimensionality and the sparsity of the signal. Simulation studies are conducted to demonstrate the utility of the proposed test.
Sparse Canonical Correlation Analysis (CCA) has received considerable attention in high-dimensional data analysis to study the relationship between two sets of random variables. However, there has been remarkably little theoretical statistical foundation on sparse CCA in high-dimensional settings despite active methodological and applied research activities. In this paper, we introduce an elementary sufficient and necessary characterization such that the solution of CCA is indeed sparse, propose a computationally efficient procedure, called CAPIT, to estimate the canonical directions, and show that the procedure is rate-optimal under various assumptions on nuisance parameters. The procedure is applied to a breast cancer dataset from The Cancer Genome Atlas project. We identify methylation probes that are associated with genes, which have been previously characterized as prognosis signatures of the metastasis of breast cancer.
In this paper, we propose a cone projected power iteration algorithm to recover the first principal eigenvector from a noisy positive semidefinite matrix. When the true principal eigenvector is assumed to belong to a convex cone, the proposed algorithm is fast and has a tractable error. Specifically, the method achieves polynomial time complexity for certain convex cones equipped with fast projection such as the monotone cone. It attains a small error when the noisy matrix has a small cone-restricted operator norm. We supplement the above results with a minimax lower bound of the error under the spiked covariance model. Our numerical experiments on simulated and real data, show that our method achieves shorter run time and smaller error in comparison to the ordinary power iteration and some sparse principal component analysis algorithms if the principal eigenvector is in a convex cone.
We consider a sparse multi-task regression framework for fitting a collection of related sparse models. Representing models as nodes in a graph with edges between related models, a framework that fuses lasso regressions with the total variation penalty is investigated. Under a form of restricted eigenvalue assumption, bounds on prediction and squared error are given that depend upon the sparsity of each model and the differences between related models. This assumption relates to the smallest eigenvalue restricted to the intersection of two cone sets of the covariance matrix constructed from each of the agents covariances. We show that this assumption can be satisfied if the constructed covariance matrix satisfies a restricted isometry property. In the case of a grid topology high-probability bounds are given that match, up to log factors, the no-communication setting of fitting a lasso on each model, divided by the number of agents. A decentralised dual method that exploits a convex-concave formulation of the penalised problem is proposed to fit the models and its effectiveness demonstrated on simulations against the group lasso and variants.
We consider the estimation of large covariance and precision matrices from high-dimensional sub-Gaussian or heavier-tailed observations with slowly decaying temporal dependence. The temporal dependence is allowed to be long-range so with longer memory than those considered in the current literature. We show that several commonly used methods for independent observations can be applied to the temporally dependent data. In particular, the rates of convergence are obtained for the generalized thresholding estimation of covariance and correlation matrices, and for the constrained $ell_1$ minimization and the $ell_1$ penalized likelihood estimation of precision matrix. Properties of sparsistency and sign-consistency are also established. A gap-block cross-validation method is proposed for the tuning parameter selection, which performs well in simulations. As a motivating example, we study the brain functional connectivity using resting-state fMRI time series data with long-range temporal dependence.