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Register a new userSparse CCA via Precision Adjusted Iterative Thresholding
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Added by
Zhao Ren
Publication date
2013
fields
Mathematical Statistics
and research's language is
English
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Sparse Canonical Correlation Analysis (CCA) has received considerable attention in high-dimensional data analysis to study the relationship between two sets of random variables. However, there has been remarkably little theoretical statistical foundation on sparse CCA in high-dimensional settings despite active methodological and applied research activities. In this paper, we introduce an elementary sufficient and necessary characterization such that the solution of CCA is indeed sparse, propose a computationally efficient procedure, called CAPIT, to estimate the canonical directions, and show that the procedure is rate-optimal under various assumptions on nuisance parameters. The procedure is applied to a breast cancer dataset from The Cancer Genome Atlas project. We identify methylation probes that are associated with genes, which have been previously characterized as prognosis signatures of the metastasis of breast cancer.
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In sparse principal component analysis we are given noisy observations of a low-rank matrix of dimension $ntimes p$ and seek to reconstruct it under additional sparsity assumptions. In particular, we assume here each of the principal components $mathbf{v}_1,dots,mathbf{v}_r$ has at most $s_0$ non-zero entries. We are particularly interested in the high dimensional regime wherein $p$ is comparable to, or even much larger than $n$. In an influential paper, cite{johnstone2004sparse} introduced a simple algorithm that estimates the support of the principal vectors $mathbf{v}_1,dots,mathbf{v}_r$ by the largest entries in the diagonal of the empirical covariance. This method can be shown to identify the correct support with high probability if $s_0le K_1sqrt{n/log p}$, and to fail with high probability if $s_0ge K_2 sqrt{n/log p}$ for two constants $0<K_1,K_2<infty$. Despite a considerable amount of work over the last ten years, no practical algorithm exists with provably better support recovery guarantees. Here we analyze a covariance thresholding algorithm that was recently proposed by cite{KrauthgamerSPCA}. On the basis of numerical simulations (for the rank-one case), these authors conjectured that covariance thresholding correctly recover the support with high probability for $s_0le Ksqrt{n}$ (assuming $n$ of the same order as $p$). We prove this conjecture, and in fact establish a more general guarantee including higher-rank as well as $n$ much smaller than $p$. Recent lower bounds cite{berthet2013computational, ma2015sum} suggest that no polynomial time algorithm can do significantly better. The key technical component of our analysis develops new bounds on the norm of kernel random matrices, in regimes that were not considered before.
Iterative hard thresholding (IHT) is a projected gradient descent algorithm, known to achieve state of the art performance for a wide range of structured estimation problems, such as sparse inference. In this work, we consider IHT as a solution to the problem of learning sparse discrete distributions. We study the hardness of using IHT on the space of measures. As a practical alternative, we propose a greedy approximate projection which simultaneously captures appropriate notions of sparsity in distributions, while satisfying the simplex constraint, and investigate the convergence behavior of the resulting procedure in various settings. Our results show, both in theory and practice, that IHT can achieve state of the art results for learning sparse distributions.
We consider testing the equality of two high-dimensional covariance matrices by carrying out a multi-level thresholding procedure, which is designed to detect sparse and faint differences between the covariances. A novel U-statistic composition is developed to establish the asymptotic distribution of the thresholding statistics in conjunction with the matrix blocking and the coupling techniques. We propose a multi-thresholding test that is shown to be powerful in detecting sparse and weak differences between two covariance matrices. The test is shown to have attractive detection boundary and to attain the optimal minimax rate in the signal strength under different regimes of high dimensionality and the sparsity of the signal. Simulation studies are conducted to demonstrate the utility of the proposed test.
Sparse Group LASSO (SGL) is a regularized model for high-dimensional linear regression problems with grouped covariates. SGL applies $l_1$ and $l_2$ penalties on the individual predictors and group predictors, respectively, to guarantee sparse effects both on the inter-group and within-group levels. In this paper, we apply the approximate message passing (AMP) algorithm to efficiently solve the SGL problem under Gaussian random designs. We further use the recently developed state evolution analysis of AMP to derive an asymptotically exact characterization of SGL solution. This allows us to conduct multiple fine-grained statistical analyses of SGL, through which we investigate the effects of the group information and $gamma$ (proportion of $ell_1$ penalty). With the lens of various performance measures, we show that SGL with small $gamma$ benefits significantly from the group information and can outperform other SGL (including LASSO) or regularized models which does not exploit the group information, in terms of the recovery rate of signal, false discovery rate and mean squared error.
We derive a formula for optimal hard thresholding of the singular value decomposition in the presence of correlated additive noise; although it nominally involves unobservables, we show how to apply it even where the noise covariance structure is not a-priori known or is not independently estimable. The proposed method, which we call ScreeNOT, is a mathematically solid alternative to Cattells ever-popular but vague Scree Plot heuristic from 1966. ScreeNOT has a surprising oracle property: it typically achieves exactly, in large finite samples, the lowest possible MSE for matrix recovery, on each given problem instance - i.e. the specific threshold it selects gives exactly the smallest achievable MSE loss among all possible threshold choices for that noisy dataset and that unknown underlying true low rank model. The method is computationally efficient and robust against perturbations of the underlying covariance structure. Our results depend on the assumption that the singular values of the noise have a limiting empirical distribution of compact support; this model, which is standard in random matrix theory, is satisfied by many models exhibiting either cross-row correlation structure or cross-column correlation structure, and also by many situations where there is inter-element correlation structure. Simulations demonstrate the effectiveness of the method even at moderate matrix sizes. The paper is supplemented by ready-to-use software packages implementing the proposed algorithm.
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