Do you want to publish a course? Click here

Lattice Models of Nonequilibrium Bacterial Dynamics

104   0   0.0 ( 0 )
 Added by Alasdair Thompson
 Publication date 2010
  fields Physics
and research's language is English




Ask ChatGPT about the research

We study a model of self propelled particles exhibiting run and tumble dynamics on lattice. This non-Brownian diffusion is characterised by a random walk with a finite persistence length between changes of direction, and is inspired by the motion of bacteria such as E. coli. By defining a class of models with multiple species of particle and transmutation between species we can recreate such dynamics. These models admit exact analytical results whilst also forming a counterpart to previous continuum models of run and tumble dynamics. We solve the externally driven non-interacting and zero-rang



rate research

Read More

We investigate the particle and heat transport in quantum junctions with the geometry of star graphs. The system is in a nonequilibrium steady state, characterized by the different temperatures and chemical potentials of the heat reservoirs connected to the edges of the graph. We explore the Landauer-Buettiker state and its orbit under parity and time reversal transformations. Both particle number and total energy are conserved in these states. However the heat and chemical potential energy are in general not separately conserved, which gives origin to a basic process of energy transmutation among them. We study both directions of this process in detail, introducing appropriate efficiency coefficients. For scale invariant interactions in the junction our results are exact and explicit. They cover the whole parameter space and take into account all nonlinear effects. The energy transmutation depends on the particle statistics.
130 - Ying-Jen Yang , Hong Qian 2021
A stochastic dynamics has a natural decomposition into a drift capturing mean rate of change and a martingale increment capturing randomness. They are two statistically uncorrelated, but not necessarily independent mechanisms contributing to the overall fluctuations of the dynamics, representing the uncertainties in the past and in the future. A generalized Einstein relation is a consequence solely because the dynamics being stationary; and the Green-Kubo formula reflects a balance between the two mechanisms. Equilibrium with reversibility is characterized by a novel covariance symmetry.
81 - T. Koide 2017
Jarzynskis nonequilibrium work relation can be understood as the realization of the (hidden) time-generator reciprocal symmetry satisfied for the conditional probability function. To show this, we introduce the reciprocal process where the classical probability theory is expressed with real wave functions, and derive a mathematical relation using the symmetry. We further discuss that the descriptions by the standard Markov process from an initial equilibrium state are indistinguishable from those by the reciprocal process. Then the Jarzynski relation is obtained from the mathematical relation for the Markov processes described by the Fokker-Planck, Kramers and relativistic Kramers equations.
148 - Ziga Krajnik , Tomaz Prosen 2019
We introduce a deterministic SO(3) invariant dynamics of classical spins on a discrete space-time lattice and prove its complete integrability by explicitly finding a related non-constant (baxterized) solution of the set-theoretic quantum Yang-Baxter equation over the 2-sphere. Equipping the algebraic structure with the corresponding Lax operator we derive an infinite sequence of conserved quantities with local densities. The dynamics depend on a single continuous spectral parameter and reduce to a (lattice) Landau-Lifshitz model in the limit of a small parameter which corresponds to the continuous time limit. Using quasi-exact numerical simulations of deterministic dynamics and Monte Carlo sampling of initial conditions corresponding to a maximum entropy equilibrium state we determine spin-spin spatio-temporal (dynamical) correlation functions with relative accuracy of three orders of magnitude. We demonstrate that in the equilibrium state with a vanishing total magnetization the correlation function precisely follow Kardar-Parisi-Zhang scaling hence the spin transport belongs to the universality class with dynamical exponent z=3/2, in accordance to recent related simulations in discrete and continuous time quantum Heisenberg spin 1/2 chains.
It has been argued that there is biological and modeling evidence that a non-linear diffusion coefficient of the type D(b) = D_0 b^{k} underlies the formation of a number of growth patterns of bacterial colonies. We study a reaction-diffusion system with a non-linear diffusion coefficient introduced by Ben-Jacob et al. Due to the fact that the bacterial diffusion coefficient vanishes when the bacterial density b -> 0, the standard linear stability analysis for fronts cannot be used. We introduce an extension of the stability analysis which can be applied to such singular fronts, map out the region of stability in the D-k-plane and derive an interfacial approximation in some limits. Our linear stability analysis and sharp interface formulation will also be applicable to other examples of interface formation due to nonlinear diffusion, like in porous media or in the problem of vortex motion in superconductors.
comments
Fetching comments Fetching comments
mircosoft-partner

هل ترغب بارسال اشعارات عن اخر التحديثات في شمرا-اكاديميا