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Register a new userOne to Many: Adaptive Instrument Segmentation via Meta Learning and Dynamic Online Adaptation in Robotic Surgical Video
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Added by
Zixu Zhao
Publication date
2021
fields
Informatics Engineering
and research's language is
English
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Surgical instrument segmentation in robot-assisted surgery (RAS) - especially that using learning-based models - relies on the assumption that training and testing videos are sampled from the same domain. However, it is impractical and expensive to collect and annotate sufficient data from every new domain. To greatly increase the label efficiency, we explore a new problem, i.e., adaptive instrument segmentation, which is to effectively adapt one source model to new robotic surgical videos from multiple target domains, only given the annotated instruments in the first frame. We propose MDAL, a meta-learning based dynamic online adaptive learning scheme with a two-stage framework to fast adapt the model parameters on the first frame and partial subsequent frames while predicting the results. MDAL learns the general knowledge of instruments and the fast adaptation ability through the video-specific meta-learning paradigm. The added gradient gate excludes the noisy supervision from pseudo masks for dynamic online adaptation on target videos. We demonstrate empirically that MDAL outperforms other state-of-the-art methods on two datasets (including a real-world RAS dataset). The promising performance on ex-vivo scenes also benefits the downstream tasks such as robot-assisted suturing and camera control.
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In mainstream computer vision and machine learning, public datasets such as ImageNet, COCO and KITTI have helped drive enormous improvements by enabling researchers to understand the strengths and limitations of different algorithms via performance comparison. However, this type of approach has had limited translation to problems in robotic assisted surgery as this field has never established the same level of common datasets and benchmarking methods. In 2015 a sub-challenge was introduced at the EndoVis workshop where a set of robotic images were provided with automatically generated annotations from robot forward kinematics. However, there were issues with this dataset due to the limited background variation, lack of complex motion and inaccuracies in the annotation. In this work we present the results of the 2017 challenge on robotic instrument segmentation which involved 10 teams participating in binary, parts and type based segmentation of articulated da Vinci robotic instruments.
Accurate instrument segmentation in endoscopic vision of robot-assisted surgery is challenging due to reflection on the instruments and frequent contacts with tissue. Deep neural networks (DNN) show competitive performance and are in favor in recent years. However, the hunger of DNN for labeled data poses a huge workload of annotation. Motivated by alleviating this workload, we propose a general embeddable method to decrease the usage of labeled real images, using active generated synthetic images. In each active learning iteration, the most informative unlabeled images are first queried by active learning and then labeled. Next, synthetic images are generated based on these selected images. The instruments and backgrounds are cropped out and randomly combined with each other with blending and fusion near the boundary. The effectiveness of the proposed method is validated on 2 sinus surgery datasets and 1 intraabdominal surgery dataset. The results indicate a considerable improvement in performance, especially when the budget for annotation is small. The effectiveness of different types of synthetic images, blending methods, and external background are also studied. All the code is open-sourced at: https://github.com/HaonanPeng/active_syn_generator.
Recent works on interactive video object cutout mainly focus on designing dynamic foreground-background (FB) classifiers for segmentation propagation. However, the research on optimally removing errors from the FB classification is sparse, and the errors often accumulate rapidly, causing significant errors in the propagated frames. In this work, we take the initial steps to addressing this problem, and we call this new task emph{segmentation rectification}. Our key observation is that the possibly asymmetrically distributed false positive and false negative errors were handled equally in the conventional methods. We, alternatively, propose to optimally remove these two types of errors. To this effect, we propose a novel bilayer Markov Random Field (MRF) model for this new task. We also adopt the well-established structured learning framework to learn the optimal model from data. Additionally, we propose a novel one-class structured SVM (OSSVM) which greatly speeds up the structured learning process. Our method naturally extends to RGB-D videos as well. Comprehensive experiments on both RGB and RGB-D data demonstrate that our simple and effective method significantly outperforms the segmentation propagation methods adopted in the state-of-the-art video cutout systems, and the results also suggest the potential usefulness of our method in image cutout system.
Online video object segmentation is a challenging task as it entails to process the image sequence timely and accurately. To segment a target object through the video, numerous CNN-based methods have been developed by heavily finetuning on the object mask in the first frame, which is time-consuming for online applications. In this paper, we propose a fast and accurate video object segmentation algorithm that can immediately start the segmentation process once receiving the images. We first utilize a part-based tracking method to deal with challenging factors such as large deformation, occlusion, and cluttered background. Based on the tracked bounding boxes of parts, we construct a region-of-interest segmentation network to generate part masks. Finally, a similarity-based scoring function is adopted to refine these object parts by comparing them to the visual information in the first frame. Our method performs favorably against state-of-the-art algorithms in accuracy on the DAVIS benchmark dataset, while achieving much faster runtime performance.
Purpose: Segmentation of surgical instruments in endoscopic videos is essential for automated surgical scene understanding and process modeling. However, relying on fully supervised deep learning for this task is challenging because manual annotation occupies valuable time of the clinical experts. Methods: We introduce a teacher-student learning approach that learns jointly from annotated simulation data and unlabeled real data to tackle the erroneous learning problem of the current consistency-based unsupervised domain adaptation framework. Results: Empirical results on three datasets highlight the effectiveness of the proposed framework over current approaches for the endoscopic instrument segmentation task. Additionally, we provide analysis of major factors affecting the performance on all datasets to highlight the strengths and failure modes of our approach. Conclusion: We show that our proposed approach can successfully exploit the unlabeled real endoscopic video frames and improve generalization performance over pure simulation-based training and the previous state-of-the-art. This takes us one step closer to effective segmentation of surgical tools in the annotation scarce setting.
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