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A full-chain tube-based constitutive model for living linear polymers

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 Added by Joseph Peterson
 Publication date 2020
  fields Physics
and research's language is English




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We present a new strategy for introducing population balances into full-chain constitutive models of living polymers with linear chain architectures. We provide equations to describe a range of stress relaxation processes covering both unentangled systems (Rouse-like motion) and well entangled systems (reptation, contour length fluctuations, chain retraction, and constraint release). Special attention is given to the solutions that emerge when the breaking time of the chain becomes fast compared to various stress relaxation processes. In these fast breaking limits, we reproduce previously known results (with some corrections) and also present new results for nonlinear stress relaxation dynamics. Our analysis culminates with a fully developed constitutive model for the fast breaking regime in which stress relaxation is dominated by contour length fluctuations. Linear and nonlinear rheology predictions of the model are presented and discussed.



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We investigate the chain conformation of ring polymers confined to a cylindrical nanochannel using both theoretical analysis and three dimensional Langevin dynamics simulations. We predict that the longitudinal size of a ring polymer scales with the chain length and the diameter of the channel in the same manner as that for linear chains based on scaling analysis and Flory-type theory. Moreover, Flory-type theory also gives the ratio of the longitudinal sizes for a ring polymer and a linear chain with identical chain length. These theoretical predictions are confirmed by numerical simulations. Finally, our simulation results show that this ratio first decreases and then saturates with increasing the chain stiffness, which has interpreted the discrepancy in experiments. Our results have biological significance.
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We present a model for semiflexible polymers in Hamiltonian formulation which interpolates between a Rouse chain and worm-like chain. Both models are realized as limits for the parameters. The model parameters can also be chosen to match the experimental force-extension curve for double-stranded DNA. Near the ground state of the Hamiltonian, the eigenvalues for the longitudinal (stretching) and the transversal (bending) modes of a chain with N springs, indexed by p, scale as lambda_lp ~ (p/N)^2 and lambda_tp ~ p^2(p-1)^2/N^4 respectively for small p. We also show that the associated decay times tau_p ~ (N/p)^4 will not be observed if they exceed the orientational time scale tau_r ~ N^3 for an equally-long rigid rod, as the driven decay is then washed out by diffusive motion.
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