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Register a new userNeural Entity Summarization with Joint Encoding and Weak Supervision
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Added by
Gong Cheng
Publication date
2020
fields
Informatics Engineering
and research's language is
English
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In a large-scale knowledge graph (KG), an entity is often described by a large number of triple-structured facts. Many applications require abridge
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The success of neural summarization models stems from the meticulous encodings of source articles. To overcome the impediments of limited and sometimes noisy training data, one promising direction is to make better use of the available training data by applying filters during summarization. In this paper, we propose a novel Bi-directional Selective Encoding with Template (BiSET) model, which leverages template discovered from training data to softly select key information from each source article to guide its summarization process. Extensive experiments on a standard summarization dataset were conducted and the results show that the template-equipped BiSET model manages to improve the summarization performance significantly with a new state of the art.
Cross-lingual Entity Linking (XEL) aims to ground entity mentions written in any language to an English Knowledge Base (KB), such as Wikipedia. XEL for most languages is challenging, owing to limited availability of resources as supervision. We address this challenge by developing the first XEL approach that combines supervision from multiple languages jointly. This enables our approach to: (a) augment the limited supervision in the target language with additional supervision from a high-resource language (like English), and (b) train a single entity linking model for multiple languages, improving upon individually trained models for each language. Extensive evaluation on three benchmark datasets across 8 languages shows that our approach significantly improves over the current state-of-the-art. We also provide analyses in two limited resource settings: (a) zero-shot setting, when no supervision in the target language is available, and in (b) low-resource setting, when some supervision in the target language is available. Our analysis provides insights into the limitations of zero-shot XEL approaches in realistic scenarios, and shows the value of joint supervision in low-resource settings.
Information retrieval (IR) for precision medicine (PM) often involves looking for multiple pieces of evidence that characterize a patient case. This typically includes at least the name of a condition and a genetic variation that applies to the patient. Other factors such as demographic attributes, comorbidities, and social determinants may also be pertinent. As such, the retrieval problem is often formulated as ad hoc search but with multiple facets (e.g., disease, mutation) that may need to be incorporated. In this paper, we present a document reranking approach that combines neural query-document matching and text summarization toward such retrieval scenarios. Our architecture builds on the basic BERT model with three specific components for reranking: (a). document-query matching (b). keyword extraction and (c). facet-conditioned abstractive summarization. The outcomes of (b) and (c) are used to essentially transform a candidate document into a concise summary that can be compared with the query at hand to compute a relevance score. Component (a) directly generates a matching score of a candidate document for a query. The full architecture benefits from the complementary potential of document-query matching and the novel document transformation approach based on summarization along PM facets. Evaluations using NISTs TREC-PM track datasets (2017--2019) show that our model achieves state-of-the-art performance. To foster reproducibility, our code is made available here: https://github.com/bionlproc/text-summ-for-doc-retrieval.
Entity summarization aims at creating brief but informative descriptions of entities from knowledge graphs. While previous work mostly focused on traditional techniques such as clustering algorithms and graph models, we ask how to apply deep learning methods into this task. In this paper we propose ESA, a neural network with supervised attention mechanisms for entity summarization. Specifically, we calculate attention weights for facts in each entity, and rank facts to generate reliable summaries. We explore techniques to solve difficult learning problems presented by the ESA, and demonstrate the effectiveness of our model in comparison with the state-of-the-art methods. Experimental results show that our model improves the quality of the entity summaries in both F-measure and MAP.
We created this CORD-NER dataset with comprehensive named entity recognition (NER) on the COVID-19 Open Research Dataset Challenge (CORD-19) corpus (2020-03-13). This CORD-NER dataset covers 75 fine-grained entity types: In addition to the common biomedical entity types (e.g., genes, chemicals and diseases), it covers many new entity types related explicitly to the COVID-19 studies (e.g., coronaviruses, viral proteins, evolution, materials, substrates and immune responses), which may benefit research on COVID-19 related virus, spreading mechanisms, and potential vaccines. CORD-NER annotation is a combination of four sources with different NER methods. The quality of CORD-NER annotation surpasses SciSpacy (over 10% higher on the F1 score based on a sample set of documents), a fully supervised BioNER tool. Moreover, CORD-NER supports incrementally adding new documents as well as adding new entity types when needed by adding dozens of seeds as the input examples. We will constantly update CORD-NER based on the incremental updates of the CORD-19 corpus and the improvement of our system.
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