Subscribe to the gold package and get unlimited access to Shamra Academy
Register a new userLiterature Retrieval for Precision Medicine with Neural Matching and Faceted Summarization
271
0
0.0
(
0
)
Added by
Jiho Noh
Publication date
2020
fields
Informatics Engineering
and research's language is
English
Ask ChatGPT about the research
No Arabic abstract
Information retrieval (IR) for precision medicine (PM) often involves looking for multiple pieces of evidence that characterize a patient case. This typically includes at least the name of a condition and a genetic variation that applies to the patient. Other factors such as demographic attributes, comorbidities, and social determinants may also be pertinent. As such, the retrieval problem is often formulated as ad hoc search but with multiple facets (e.g., disease, mutation) that may need to be incorporated. In this paper, we present a document reranking approach that combines neural query-document matching and text summarization toward such retrieval scenarios. Our architecture builds on the basic BERT model with three specific components for reranking: (a). document-query matching (b). keyword extraction and (c). facet-conditioned abstractive summarization. The outcomes of (b) and (c) are used to essentially transform a candidate document into a concise summary that can be compared with the query at hand to compute a relevance score. Component (a) directly generates a matching score of a candidate document for a query. The full architecture benefits from the complementary potential of document-query matching and the novel document transformation approach based on summarization along PM facets. Evaluations using NISTs TREC-PM track datasets (2017--2019) show that our model achieves state-of-the-art performance. To foster reproducibility, our code is made available here: https://github.com/bionlproc/text-summ-for-doc-retrieval.
rate research
Read More
In a large-scale knowledge graph (KG), an entity is often described by a large number of triple-structured facts. Many applications require abridge
Product quantization (PQ) is a widely used technique for ad-hoc retrieval. Recent studies propose supervised PQ, where the embedding and quantization models can be jointly trained with supervised learning. However, there is a lack of appropriate formulation of the joint training objective; thus, the improvements over previous non-supervised baselines are limited in reality. In this work, we propose the Matching-oriented Product Quantization (MoPQ), where a novel objective Multinoulli Contrastive Loss (MCL) is formulated. With the minimization of MCL, we are able to maximize the matching probability of query and ground-truth key, which contributes to the optimal retrieval accuracy. Given that the exact computation of MCL is intractable due to the demand of vast contrastive samples, we further propose the Differentiable Cross-device Sampling (DCS), which significantly augments the contrastive samples for precise approximation of MCL. We conduct extensive experimental studies on four real-world datasets, whose results verify the effectiveness of MoPQ. The code is available at https://github.com/microsoft/MoPQ.
Dense retrieval has shown great success in passage ranking in English. However, its effectiveness in document retrieval for non-English languages remains unexplored due to the limitation in training resources. In this work, we explore different transfer techniques for document ranking from English annotations to multiple non-English languages. Our experiments on the test collections in six languages (Chinese, Arabic, French, Hindi, Bengali, Spanish) from diverse language families reveal that zero-shot model-based transfer using mBERT improves the search quality in non-English mono-lingual retrieval. Also, we find that weakly-supervised target language transfer yields competitive performances against the generation-based target language transfer that requires external translators and query generators.
Text summarization is the research area aiming at creating a short and condensed version of the original document, which conveys the main idea of the document in a few words. This research topic has started to attract the attention of a large community of researchers, and it is nowadays counted as one of the most promising research areas. In general, text summarization algorithms aim at using a plain text document as input and then output a summary. However, in real-world applications, most of the data is not in a plain text format. Instead, there is much manifold information to be summarized, such as the summary for a web page based on a query in the search engine, extreme long document (e.g., academic paper), dialog history and so on. In this paper, we focus on the survey of these new summarization tasks and approaches in the real-world application.
Traditional image recognition involves identifying the key object in a portrait-type image with a single object focus (ILSVRC, AlexNet, and VGG). More recent approaches consider dense image recognition - segmenting an image with appropriate bounding boxes and performing image recognition within these bounding boxes (Semantic segmentation). The Visual Genome dataset [5] is an attempt to bridge these various approaches to a cohesive dataset for each subtask - bounding box generation, image recognition, captioning, and a new operation: scene graph generation. Our focus is on using such scene graphs to perform graph search on image databases to holistically retrieve images based on a search criteria. We develop a method to store scene graphs and metadata in graph databases (using Neo4J) and to perform fast approximate retrieval of images based on a graph search query. We process more complex queries than single object search, e.g. girl eating cake retrieves images that contain the specified relation as well as variations.
Log in to be able to interact and post comments
comments
Fetching comments
Sign in to be able to follow your search criteria
