No Arabic abstract
The molecular dipole moment ($boldsymbol{mu}$) is a central quantity in chemistry. It is essential in predicting infrared and sum-frequency generation spectra, as well as induction and long-range electrostatic interactions. Furthermore, it can be extracted directly from high-level quantum mechanical calculations, making it an ideal target for machine learning (ML). In this work, we choose to represent this quantity with a physically inspired ML model that captures two distinct physical effects: local atomic polarization is captured within the symmetry-adapted Gaussian process regression (SA-GPR) framework, which assigns a (vector) dipole moment to each atom, while movement of charge across the entire molecule is captured by assigning a partial (scalar) charge to each atom. The resulting MuML models are fitted together to reproduce molecular $boldsymbol{mu}$ computed using high-level coupled-cluster theory (CCSD) and density functional theory (DFT) on the QM7b dataset. The combined model shows excellent transferability when applied to a showcase dataset of larger and more complex molecules, approaching the accuracy of DFT at a small fraction of the computational cost. We also demonstrate that the uncertainty in the predictions can be estimated reliably using a calibrated committee model. The ultimate performance of the models depends, however, on the details of the system at hand, with the scalar model being clearly superior when describing large molecules whose dipole is almost entirely generated by charge separation. These observations point to the importance of simultaneously accounting for the local and non-local effects that contribute to $boldsymbol{mu}$; further, they define a challenging task to benchmark future models, particularly those aimed at the description of condensed phases.
Postulating the existence of a fnite-mass mediator of T,P-odd coupling between atomic electrons and nucleons we consider its effect on permanent electric dipole moment (EDM) of diamagnetic atoms. We present both numerical and analytical analysis for such mediator-induced EDMs and compare it with EDM results for the conventional contact interaction. Based on this analysis we derive limits on coupling strengths and carrier masses from experimental limits on EDM of 199Hg atom.
The interaction of standard models particles with the axionic Dark Matter field may generate oscillating nuclear electric dipole moments (EDMs), oscillating nuclear Schiff moments and oscillating nuclear magnetic quadrupole moments (MQMs) with a frequency corresponding to the axions Compton frequency. Within an atom or a molecule an oscillating EDM, Schiff moment or MQM can drive transitions between atomic or molecular states. The excitation events can be detected, for example, via subsequent fluorescence or photoionization. Here we calculate the rates of such transitions. If the nucleus has octupole deformation or quadrupole deformation then the transition rate due to Schiff moment and MQM can be up to $10^{-16}$ transition per molecule per year. In addition, an MQM-induced transition may be of M2-type, which is useful for the elimination of background noise since M2-type transitions are suppressed for photons.
We study the formation of C$_{18}$H and C$_{18}$H$_2$ by irradiating a cyclo[$18$]carbon molecule with atomic and molecular hydrogen at impact energy, $E$, in the range of 0.5-25 eV. We utilize the density-functional tight-binding method to perform molecular dynamics simulations to emulate the interaction of a carbon ring when colliding with atomic or molecular hydrogen. From our results, the formation of the C$_{18}$H molecules is likely to occur upon irradiating by H atoms at $E < 10$ eV and by H$_2$ molecules at $2 < E < 15$ eV center of mass energy. Formation of C$_{18}$H$_2$ molecules is only observed at around $E = 2$ eV. Our results show that the absorption of hydrogen is more prone in atomic than in molecular hydrogen atmosphere. Thus, we find that the probability of physio-absorption reaches up to 80 % for atomic projectiles with $E < 5$ eV but only up to 10 % for the molecular ones. Our analysis shows that the deformation of the carbon ring due to the hydrogen bonding produces transition from $sp$ to $sp^2$ hybridization. The angle between the carbon atoms at the locations near to the H bond in the resulting ring is not 120$^o$ but instead 110$^o$ degrees. No molecular fragmentation of the C$_{18}$ ring is observed.
Electronic structure of HCl+ and HBr+ molecular ions is calculated using the symmetry-adapted-cluster configuration interaction (SAC-CI) method. In this paper, we analyse dipole moments (DM) for a series of low-lying six 2Pi-states and transition dipole moments (TDM for transitions from the ground state X2Pi to the excited 2Pi-series. Behavior of DMs with change of interatomic distances is different for these ions for the excited 2Pi-states in correspondence with different dissociation paths. TDMs reveal the pronounced maxima at the beginning steps of dissociation.
The dynamics of a molecule in a magnetic field is significantly different form its zero-field counterpart. One important difference in the presence of a field is the Lorentz force acting on the nuclei, which can be decomposed as the sum of the bare nuclear Lorentz force and a screening force due to the electrons. This screening force is calculated from the Berry curvature and can change the dynamics qualitatively. It is therefore important to include the contributions from the Berry curvature in molecular dynamics simulations in a magnetic field. In this work, we present a scheme for calculating the Berry curvature numerically, by a finite-difference technique, addressing challenges related to the arbitrary global phase of the wave function. The Berry curvature is calculated as a function of bond distance for H$_2$ at the restricted and unrestricted Hartree--Fock levels of theory and for CH$^{+}$ as a function of the magnetic field strength at the restricted Hartree--Fock level of theory. The calculations are carried out using basis sets of contracted Gaussian functions equipped with London phase factors (London orbitals) to ensure gauge-origin invariance. In the paper, we also interpret the Berry curvature in terms of atomic charges and discuss its convergence in basis sets with and without London phase factors. Calculation of the Berry curvature allows for its inclusion in textit{ab initio} molecular dynamics simulations in a magnetic field.