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Register a new userThe Utility of General Domain Transfer Learning for Medical Language Tasks
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Daniel Ranti
Publication date
2020
fields
Informatics Engineering
and research's language is
English
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The purpose of this study is to analyze the efficacy of transfer learning techniques and transformer-based models as applied to medical natural language processing (NLP) tasks, specifically radiological text classification. We used 1,977 labeled head CT reports, from a corpus of 96,303 total reports, to evaluate the efficacy of pretraining using general domain corpora and a combined general and medical domain corpus with a bidirectional representations from transformers (BERT) model for the purpose of radiological text classification. Model performance was benchmarked to a logistic regression using bag-of-words vectorization and a long short-term memory (LSTM) multi-label multi-class classification model, and compared to the published literature in medical text classification. The BERT models using either set of pretrained checkpoints outperformed the logistic regression model, achieving sample-weighted average F1-scores of 0.87 and 0.87 for the general domain model and the combined general and biomedical-domain model. General text transfer learning may be a viable technique to generate state-of-the-art results within medical NLP tasks on radiological corpora, outperforming other deep models such as LSTMs. The efficacy of pretraining and transformer-based models could serve to facilitate the creation of groundbreaking NLP models in the uniquely challenging data environment of medical text.
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Pre-trained word embeddings are the primary method for transfer learning in several Natural Language Processing (NLP) tasks. Recent works have focused on using unsupervised techniques such as language modeling to obtain these embeddings. In contrast, this work focuses on extracting representations from multiple pre-trained supervised models, which enriches word embeddings with task and domain specific knowledge. Experiments performed in cross-task, cross-domain and cross-lingual settings indicate that such supervised embeddings are helpful, especially in the low-resource setting, but the extent of gains is dependent on the nature of the task and domain. We make our code publicly available.
Medical image processing is one of the most important topics in the field of the Internet of Medical Things (IoMT). Recently, deep learning methods have carried out state-of-the-art performances on medical image tasks. However, conventional deep learning have two main drawbacks: 1) insufficient training data and 2) the domain mismatch between the training data and the testing data. In this paper, we propose a distant domain transfer learning (DDTL) method for medical image classification. Moreover, we apply our methods to a recent issue (Coronavirus diagnose). Several current studies indicate that lung Computed Tomography (CT) images can be used for a fast and accurate COVID-19 diagnosis. However, the well-labeled training data cannot be easily accessed due to the novelty of the disease and a number of privacy policies. Moreover, the proposed method has two components: Reduced-size Unet Segmentation model and Distant Feature Fusion (DFF) classification model. It is related to a not well-investigated but important transfer learning problem, termed Distant Domain Transfer Learning (DDTL). DDTL aims to make efficient transfers even when the domains or the tasks are entirely different. In this study, we develop a DDTL model for COVID-19 diagnose using unlabeled Office-31, Catech-256, and chest X-ray image data sets as the source data, and a small set of COVID-19 lung CT as the target data. The main contributions of this study: 1) the proposed method benefits from unlabeled data collected from distant domains which can be easily accessed, 2) it can effectively handle the distribution shift between the training data and the testing data, 3) it has achieved 96% classification accuracy, which is 13% higher classification accuracy than non-transfer algorithms, and 8% higher than existing transfer and distant transfer algorithms.
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Natural language processing has huge potential in the medical domain which recently led to a lot of research in this field. However, a prerequisite of secure processing of medical documents, e.g., patient notes and clinical trials, is the proper de-identification of privacy-sensitive information. In this paper, we describe our NLNDE system, with which we participated in the MEDDOCAN competition, the medical document anonymization task of IberLEF 2019. We address the task of detecting and classifying protected health information from Spanish data as a sequence-labeling problem and investigate different embedding methods for our neural network. Despite dealing in a non-standard language and domain setting, the NLNDE system achieves promising results in the competition.
Sentiment tasks such as hate speech detection and sentiment analysis, especially when performed on languages other than English, are often low-resource. In this study, we exploit the emotional information encoded in emojis to enhance the performance on a variety of sentiment tasks. This is done using a transfer learning approach, where the parameters learned by an emoji-based source task are transferred to a sentiment target task. We analyse the efficacy of the transfer under three conditions, i.e. i) the emoji content and ii) label distribution of the target task as well as iii) the difference between monolingually and multilingually learned source tasks. We find i.a. that the transfer is most beneficial if the target task is balanced with high emoji content. Monolingually learned source tasks have the benefit of taking into account the culturally specific use of emojis and gain up to F1 +0.280 over the baseline.
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