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Register a new userRotational 3D Texture Classification Using Group Equivariant CNNs
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Added by
Vincent Andrearczyk
Publication date
2018
fields
Informatics Engineering
and research's language is
English
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Convolutional Neural Networks (CNNs) traditionally encode translation equivariance via the convolution operation. Generalization to other transformations has recently received attraction to encode the knowledge of the data geometry in group convolution operations. Equivariance to rotation is particularly important for 3D image analysis due to the large diversity of possible pattern orientations. 3D texture is a particularly important cue for the analysis of medical images such as CT and MRI scans as it describes different types of tissues and lesions. In this paper, we evaluate the use of 3D group equivariant CNNs accounting for the simplified group of right-angle rotations to classify 3D synthetic textures from a publicly available dataset. The results validate the importance of rotation equivariance in a controlled setup and yet motivate the use of a finer coverage of orientations in order to obtain equivariance to realistic rotations present in 3D textures.
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Locally Rotation Invariant (LRI) operators have shown great potential in biomedical texture analysis where patterns appear at random positions and orientations. LRI operators can be obtained by computing the responses to the discrete rotation of local descriptors, such as Local Binary Patterns (LBP) or the Scale Invariant Feature Transform (SIFT). Other strategies achieve this invariance using Laplacian of Gaussian or steerable wavelets for instance, preventing the introduction of sampling errors during the discretization of the rotations. In this work, we obtain LRI operators via the local projection of the image on the spherical harmonics basis, followed by the computation of the bispectrum, which shares and extends the invariance properties of the spectrum. We investigate the benefits of using the bispectrum over the spectrum in the design of a LRI layer embedded in a shallow Convolutional Neural Network (CNN) for 3D image analysis. The performance of each design is evaluated on two datasets and compared against a standard 3D CNN. The first dataset is made of 3D volumes composed of synthetically generated rotated patterns, while the second contains malignant and benign pulmonary nodules in Computed Tomography (CT) images. The results indicate that bispectrum CNNs allows for a significantly better characterization of 3D textures than both the spectral and standard CNN. In addition, it can efficiently learn with fewer training examples and trainable parameters when compared to a standard convolutional layer.
We propose a new model for digital pathology segmentation, based on the observation that histopathology images are inherently symmetric under rotation and reflection. Utilizing recent findings on rotation equivariant CNNs, the proposed model leverages these symmetries in a principled manner. We present a visual analysis showing improved stability on predictions, and demonstrate that exploiting rotation equivariance significantly improves tumor detection performance on a challenging lymph node metastases dataset. We further present a novel derived dataset to enable principled comparison of machine learning models, in combination with an initial benchmark. Through this dataset, the task of histopathology diagnosis becomes accessible as a challenging benchmark for fundamental machine learning research.
In this paper, we propose an efficient and effective framework to fuse hyperspectral and Light Detection And Ranging (LiDAR) data using two coupled convolutional neural networks (CNNs). One CNN is designed to learn spectral-spatial features from hyperspectral data, and the other one is used to capture the elevation information from LiDAR data. Both of them consist of three convolutional layers, and the last two convolutional layers are coupled together via a parameter sharing strategy. In the fusion phase, feature-level and decision-level fusion methods are simultaneously used to integrate these heterogeneous features sufficiently. For the feature-level fusion, three different fusion strategies are evaluated, including the concatenation strategy, the maximization strategy, and the summation strategy. For the decision-level fusion, a weighted summation strategy is adopted, where the weights are determined by the classification accuracy of each output. The proposed model is evaluated on an urban data set acquired over Houston, USA, and a rural one captured over Trento, Italy. On the Houston data, our model can achieve a new record overall accuracy of 96.03%. On the Trento data, it achieves an overall accuracy of 99.12%. These results sufficiently certify the effectiveness of our proposed model.
Contrasting the previous evidence that neurons in the later layers of a Convolutional Neural Network (CNN) respond to complex object shapes, recent studies have shown that CNNs actually exhibit a `texture bias: given an image with both texture and shape cues (e.g., a stylized image), a CNN is biased towards predicting the category corresponding to the texture. However, these previous studies conduct experiments on the final classification output of the network, and fail to robustly evaluate the bias contained (i) in the latent representations, and (ii) on a per-pixel level. In this paper, we design a series of experiments that overcome these issues. We do this with the goal of better understanding what type of shape information contained in the network is discriminative, where shape information is encoded, as well as when the network learns about object shape during training. We show that a network learns the majority of overall shape information at the first few epochs of training and that this information is largely encoded in the last few layers of a CNN. Finally, we show that the encoding of shape does not imply the encoding of localized per-pixel semantic information. The experimental results and findings provide a more accurate understanding of the behaviour of current CNNs, thus helping to inform future design choices.
We present a convolutional network that is equivariant to rigid body motions. The model uses scalar-, vector-, and tensor fields over 3D Euclidean space to represent data, and equivariant convolutions to map between such representations. These SE(3)-equivariant convolutions utilize kernels which are parameterized as a linear combination of a complete steerable kernel basis, which is derived analytically in this paper. We prove that equivariant convolutions are the most general equivariant linear maps between fields over R^3. Our experimental results confirm the effectiveness of 3D Steerable CNNs for the problem of amino acid propensity prediction and protein structure classification, both of which have inherent SE(3) symmetry.
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