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Bastiaan Veeling
Publication date
2018
fields
Informatics Engineering
and research's language is
English
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We propose a new model for digital pathology segmentation, based on the observation that histopathology images are inherently symmetric under rotation and reflection. Utilizing recent findings on rotation equivariant CNNs, the proposed model leverages these symmetries in a principled manner. We present a visual analysis showing improved stability on predictions, and demonstrate that exploiting rotation equivariance significantly improves tumor detection performance on a challenging lymph node metastases dataset. We further present a novel derived dataset to enable principled comparison of machine learning models, in combination with an initial benchmark. Through this dataset, the task of histopathology diagnosis becomes accessible as a challenging benchmark for fundamental machine learning research.
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In many machine learning tasks it is desirable that a models prediction transforms in an equivariant way under transformations of its input. Convolutional neural networks (CNNs) implement translational equivariance by construction; for other transformations, however, they are compelled to learn the proper mapping. In this work, we develop Steerable Filter CNNs (SFCNNs) which achieve joint equivariance under translations and rotations by design. The proposed architecture employs steerable filters to efficiently compute orientation dependent responses for many orientations without suffering interpolation artifacts from filter rotation. We utilize group convolutions which guarantee an equivariant mapping. In addition, we generalize Hes weight initialization scheme to filters which are defined as a linear combination of a system of atomic filters. Numerical experiments show a substantial enhancement of the sample complexity with a growing number of sampled filter orientations and confirm that the network generalizes learned patterns over orientations. The proposed approach achieves state-of-the-art on the rotated MNIST benchmark and on the ISBI 2012 2D EM segmentation challenge.
We propose a semantic segmentation model that exploits rotation and reflection symmetries. We demonstrate significant gains in sample efficiency due to increased weight sharing, as well as improvements in robustness to symmetry transformations. The group equivariant CNN framework is extended for segmentation by introducing a new equivariant (G->Z2)-convolution that transforms feature maps on a group to planar feature maps. Also, equivariant transposed convolution is formulated for up-sampling in an encoder-decoder network. To demonstrate improvements in sample efficiency we evaluate on multiple data regimes of a rotation-equivariant segmentation task: cancer metastases detection in histopathology images. We further show the effectiveness of exploiting more symmetries by varying the size of the group.
Spherical signals exist in many applications, e.g., planetary data, LiDAR scans and digitalization of 3D objects, calling for models that can process spherical data effectively. It does not perform well when simply projecting spherical data into the 2D plane and then using planar convolution neural networks (CNNs), because of the distortion from projection and ineffective translation equivariance. Actually, good principles of designing spherical CNNs are avoiding distortions and converting the shift equivariance property in planar CNNs to rotation equivariance in the spherical domain. In this work, we use partial differential operators (PDOs) to design a spherical equivariant CNN, PDO-e$text{S}^text{2}$CNN, which is exactly rotation equivariant in the continuous domain. We then discretize PDO-e$text{S}^text{2}$CNNs, and analyze the equivariance error resulted from discretization. This is the first time that the equivariance error is theoretically analyzed in the spherical domain. In experiments, PDO-e$text{S}^text{2}$CNNs show greater parameter efficiency and outperform other spherical CNNs significantly on several tasks.
In remote sensing images, the absolute orientation of objects is arbitrary. Depending on an objects orientation and on a sensors flight path, objects of the same semantic class can be observed in different orientations in the same image. Equivariance to rotation, in this context understood as responding with a rotated semantic label map when subject to a rotation of the input image, is therefore a very desirable feature, in particular for high capacity models, such as Convolutional Neural Networks (CNNs). If rotation equivariance is encoded in the network, the model is confronted with a simpler task and does not need to learn specific (and redundant) weights to address rotat
Recently, learning equivariant representations has attracted considerable research attention. Dieleman et al. introduce four operations which can be inserted into convolutional neural network to learn deep representations equivariant to rotation. However, feature maps should be copied and rotated four times in each layer in their approach, which causes much running time and memory overhead. In order to address this problem, we propose Deep Rotation Equivariant Network consisting of cycle layers, isotonic layers and decycle layers. Our proposed layers apply rotation transformation on filters rather than feature maps, achieving a speed up of more than 2 times with even less memory overhead. We evaluate DRENs on Rotated MNIST and CIFAR-10 datasets and demonstrate that it can improve the performance of state-of-the-art architectures.
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