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3D Steerable CNNs: Learning Rotationally Equivariant Features in Volumetric Data

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 Added by Maurice Weiler
 Publication date 2018
and research's language is English




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We present a convolutional network that is equivariant to rigid body motions. The model uses scalar-, vector-, and tensor fields over 3D Euclidean space to represent data, and equivariant convolutions to map between such representations. These SE(3)-equivariant convolutions utilize kernels which are parameterized as a linear combination of a complete steerable kernel basis, which is derived analytically in this paper. We prove that equivariant convolutions are the most general equivariant linear maps between fields over R^3. Our experimental results confirm the effectiveness of 3D Steerable CNNs for the problem of amino acid propensity prediction and protein structure classification, both of which have inherent SE(3) symmetry.



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In many machine learning tasks it is desirable that a models prediction transforms in an equivariant way under transformations of its input. Convolutional neural networks (CNNs) implement translational equivariance by construction; for other transformations, however, they are compelled to learn the proper mapping. In this work, we develop Steerable Filter CNNs (SFCNNs) which achieve joint equivariance under translations and rotations by design. The proposed architecture employs steerable filters to efficiently compute orientation dependent responses for many orientations without suffering interpolation artifacts from filter rotation. We utilize group convolutions which guarantee an equivariant mapping. In addition, we generalize Hes weight initialization scheme to filters which are defined as a linear combination of a system of atomic filters. Numerical experiments show a substantial enhancement of the sample complexity with a growing number of sampled filter orientations and confirm that the network generalizes learned patterns over orientations. The proposed approach achieves state-of-the-art on the rotated MNIST benchmark and on the ISBI 2012 2D EM segmentation challenge.
Motivated by objects such as electric fields or fluid streams, we study the problem of learning stochastic fields, i.e. stochastic processes whose samples are fields like those occurring in physics and engineering. Considering general transformations such as rotations and reflections, we show that spatial invariance of stochastic fields requires an inference model to be equivariant. Leveraging recent advances from the equivariance literature, we study equivariance in two classes of models. Firstly, we fully characterise equivariant Gaussian processes. Secondly, we introduce Steerable Conditional Neural Processes (SteerCNPs), a new, fully equivariant member of the Neural Process family. In experiments with Gaussian process vector fields, images, and real-world weather data, we observe that SteerCNPs significantly improve the performance of previous models and equivariance leads to improvements in transfer learning tasks.
Convolutional neural networks (CNNs) constructed natively on the sphere have been developed recently and shown to be highly effective for the analysis of spherical data. While an efficient framework has been formulated, spherical CNNs are nevertheless highly computationally demanding; typically they cannot scale beyond spherical signals of thousands of pixels. We develop scattering networks constructed natively on the sphere that provide a powerful representational space for spherical data. Spherical scattering networks are computationally scalable and exhibit rotational equivariance, while their representational space is invariant to isometries and provides efficient and stable signal representations. By integrating scattering networks as an additional type of layer in the generalized spherical CNN framework, we show how they can be leveraged to scale spherical CNNs to the high-resolution data typical of many practical applications, with spherical signals of many tens of megapixels and beyond.
Convolutional Neural Networks (CNNs) traditionally encode translation equivariance via the convolution operation. Generalization to other transformations has recently received attraction to encode the knowledge of the data geometry in group convolution operations. Equivariance to rotation is particularly important for 3D image analysis due to the large diversity of possible pattern orientations. 3D texture is a particularly important cue for the analysis of medical images such as CT and MRI scans as it describes different types of tissues and lesions. In this paper, we evaluate the use of 3D group equivariant CNNs accounting for the simplified group of right-angle rotations to classify 3D synthetic textures from a publicly available dataset. The results validate the importance of rotation equivariance in a controlled setup and yet motivate the use of a finer coverage of orientations in order to obtain equivariance to realistic rotations present in 3D textures.
We introduce the SE(3)-Transformer, a variant of the self-attention module for 3D point clouds and graphs, which is equivariant under continuous 3D roto-translations. Equivariance is important to ensure stable and predictable performance in the presence of nuisance transformations of the data input. A positive corollary of equivariance is increased weight-tying within the model. The SE(3)-Transformer leverages the benefits of self-attention to operate on large point clouds and graphs with varying number of points, while guaranteeing SE(3)-equivariance for robustness. We evaluate our model on a toy N-body particle simulation dataset, showcasing the robustness of the predictions under rotations of the input. We further achieve competitive performance on two real-world datasets, ScanObjectNN and QM9. In all cases, our model outperforms a strong, non-equivariant attention baseline and an equivariant model without attention.

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