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Register a new userAPI design for machine learning software: experiences from the scikit-learn project
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Added by
Gael Varoquaux
Publication date
2013
fields
Informatics Engineering
and research's language is
English
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Scikit-learn is an increasingly popular machine learning li- brary. Written in Python, it is designed to be simple and efficient, accessible to non-experts, and reusable in various contexts. In this paper, we present and discuss our design choices for the application programming interface (API) of the project. In particular, we describe the simple and elegant interface shared by all learning and processing units in the library and then discuss its advantages in terms of composition and reusability. The paper also comments on implementation details specific to the Python ecosystem and analyzes obstacles faced by users and developers of the library.
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Statistical machine learning methods are increasingly used for neuroimaging data analysis. Their main virtue is their ability to model high-dimensional datasets, e.g. multivariate analysis of activation images or resting-state time series. Supervised learning is typically used in decoding or encoding settings to relate brain images to behavioral or clinical observations, while unsupervised learning can uncover hidden structures in sets of images (e.g. resting state functional MRI) or find sub-populations in large cohorts. By considering different functional neuroimaging applications, we illustrate how scikit-learn, a Python machine learning library, can be used to perform some key analysis steps. Scikit-learn contains a very large set of statistical learning algorithms, both supervised and unsupervised, and its application to neuroimaging data provides a versatile tool to study the brain.
The Scikit-HEP project is a community-driven and community-oriented effort with the aim of providing Particle Physics at large with a Python scientific toolset containing core and common tools. The project builds on five pillars that embrace the major topics involved in a physicists analysis work: datasets, data aggregations, modelling, simulation and visualisation. The vision is to build a user and developer community engaging collaboration across experiments, to emulate scikit-learns unified interface with Astropys embrace of third-party packages, and to improve discoverability of relevant tools.
We introduce Geomstats, an open-source Python toolbox for computations and statistics on nonlinear manifolds, such as hyperbolic spaces, spaces of symmetric positive definite matrices, Lie groups of transformations, and many more. We provide object-oriented and extensively unit-tested implementations. Among others, manifolds come equipped with families of Riemannian metrics, with associated exponential and logarithmic maps, geodesics and parallel transport. Statistics and learning algorithms provide methods for estimation, clustering and dimension reduction on manifolds. All associated operations are vectorized for batch computation and provide support for different execution backends, namely NumPy, PyTorch and TensorFlow, enabling GPU acceleration. This paper presents the package, compares it with related libraries and provides relevant code examples. We show that Geomstats provides reliable building blocks to foster research in differential geometry and statistics, and to democratize the use of Riemannian geometry in machine learning applications. The source code is freely available under the MIT license at url{geomstats.ai}.
Rising concern for the societal implications of artificial intelligence systems has inspired demands for greater transparency and accountability. However the datasets which empower machine learning are often used, shared and re-used with little visibility into the processes of deliberation which led to their creation. Which stakeholder groups had their perspectives included when the dataset was conceived? Which domain experts were consulted regarding how to model subgroups and other phenomena? How were questions of representational biases measured and addressed? Who labeled the data? In this paper, we introduce a rigorous framework for dataset development transparency which supports decision-making and accountability. The framework uses the cyclical, infrastructural and engineering nature of dataset development to draw on best practices from the software development lifecycle. Each stage of the data development lifecycle yields a set of documents that facilitate improved communication and decision-making, as well as drawing attention the value and necessity of careful data work. The proposed framework is intended to contribute to closing the accountability gap in artificial intelligence systems, by making visible the often overlooked work that goes into dataset creation.
Scientific Computing relies on executing computer algorithms coded in some programming languages. Given a particular available hardware, algorithms speed is a crucial factor. There are many scientific computing environments used to code such algorithms. Matlab is one of the most tremendously successful and widespread scientific computing environments that is rich of toolboxes, libraries, and data visualization tools. OpenCV is a (C++)-based library written primarily for Computer Vision and its related areas. This paper presents a comparative study using 20 different real datasets to compare the speed of Matlab and OpenCV for some Machine Learning algorithms. Although Matlab is more convenient in developing and data presentation, OpenCV is much faster in execution, where the speed ratio reaches more than 80 in some cases. The best of two worlds can be achieved by exploring using Matlab or similar environments to select the most successful algorithm; then, implementing the selected algorithm using OpenCV or similar environments to gain a speed factor.
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