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Register a new userPhysarum Can Compute Shortest Paths
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Added by
Girish Varma
Publication date
2011
fields
Informatics Engineering
and research's language is
English
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Physarum Polycephalum is a slime mold that is apparently able to solve shortest path problems. A mathematical model has been proposed by biologists to describe the feedback mechanism used by the slime mold to adapt its tubular channels while foraging two food sources s0 and s1. We prove that, under this model, the mass of the mold will eventually converge to the shortest s0 - s1 path of the network that the mold lies on, independently of the structure of the network or of the initial mass distribution. This matches the experimental observations by the biologists and can be seen as an example of a natural algorithm, that is, an algorithm developed by evolution over millions of years.
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The determination of collision-free shortest paths among growing discs has previously been studied for discs with fixed growing rates. Here, we study a more general case of this problem, where: (1) the speeds at which the discs are growing are polynomial functions of degree $dd$, and (2) the source and destination points are given as query points. We show how to preprocess the $n$ growing discs so that, for two given query points $s$ and $d$, a shortest path from $s$ to $d$ can be found in $O(n^2 log (dd n))$ time. The preprocessing time of our algorithm is $O(n^2 log n + k log k)$ where $k$ is the number of intersections between the growing discs and the tangent paths (straight line paths which touch the boundaries of two growing discs). We also prove that $k in O(n^3dd)$.
We consider the parameterized complexity of the problem of tracking shortest s-t paths in graphs, motivated by applications in security and wireless networks. Given an undirected and unweighted graph with a source s and a destination t, Tracking Shortest Paths asks if there exists a k-sized subset of vertices (referred to as tracking set) that intersects each shortest s-t path in a distinct set of vertices. We first generalize this problem for set systems, namely Tracking Set System, where given a family of subsets of a universe, we are required to find a subset of elements from the universe that has a unique intersection with each set in the family. Tracking Set System is shown to be fixed-parameter tractable due to its relation with a known problem, Test Cover. By a reduction to the well-studied d-hitting set problem, we give a polynomial (with respect to k) kernel for the case when the set sizes are bounded by d. This also helps solving Tracking Shortest Paths when the input graph diameter is bounded by d. While the results for Tracking Set System help to show that Tracking Shortest Paths is fixed-parameter tractable, we also give an independent algorithm by using some preprocessing rules, resulting in an improved running time.
In this paper, we study the single-source shortest-path (SSSP) problem with positive edge weights, which is a notoriously hard problem in the parallel context. In practice, the $Delta$-stepping algorithm proposed by Meyer and Sanders has been widely adopted. However, $Delta$-stepping has no known worst-case bounds for general graphs. The performance of $Delta$-stepping also highly relies on the parameter $Delta$. There have also been lots of algorithms with theoretical bounds, such as Radius-stepping, but they either have no implementations available or are much slower than $Delta$-stepping in practice. We propose a stepping algorithm framework that generalizes existing algorithms such as $Delta$-stepping and Radius-stepping. The framework allows for similar analysis and implementations of all stepping algorithms. We also propose a new ADT, lazy-batched priority queue (LaB-PQ), that abstracts the semantics of the priority queue needed by the stepping algorithms. We provide two data structures for LaB-PQ, focusing on theoretical and practical efficiency, respectively. Based on the new framework and LaB-PQ, we show two new stepping algorithms, $rho$-stepping and $Delta^*$-stepping, that are simple, with non-trivial worst-case bounds, and fast in practice. The stepping algorithm framework also provides almost identical implementations for three algorithms: Bellman-Ford, $Delta^*$-stepping, and $rho$-stepping. We compare our code with four state-of-the-art implementations. On five social and web graphs, $rho$-stepping is 1.3--2.5x faster than all the existing implementations. On two road graphs, our $Delta^*$-stepping is at least 14% faster than existing implementations, while $rho$-stepping is also competitive. The almost identical implementations for stepping algorithms also allow for in-depth analyses and comparisons among the stepping algorithms in practice.
The efficient computation of shortest paths in complex networks is essential to face new challenges related to critical infrastructures such as a near real-time monitoring and control and the management of big size systems. In particular, using information on the minimum paths in water distribution networks (WDNs) allows to track the diffusion of contaminants and to quantify the resilience and criticality of the system. This is, ultimately, approached by considering dynamically changing path-weights that depend on the flow or on other information available at run-time. These analyses tipically include all the WDN assets but reducing the high degree of physical details with a minimum lost of key information for their performance assessment. This paper proposes a strategy to compute minimum paths that is based on a dimensionality-reduction process. Specifically, the network is partitioned into communities and suitably modified to obtain a reduced complexity representation (e.g., in terms of number of nodes and links). The paper shows how this novel, reduced representation is equivalent to the traditional network on computing the shortest paths. The proposed approach is validated considering two utility networks as case studies. The results show that the proposed method provides the exact solution for the shortest path with a computational-time reduction consistently over 50% and up to 90% for some cases. Furthermore, the application of the proposal on WDNs partitioning shows both hydraulic and economic advantages thanks to their monitoring and controlling at near real-time.
In the decremental $(1+epsilon)$-approximate Single-Source Shortest Path (SSSP) problem, we are given a graph $G=(V,E)$ with $n = |V|, m = |E|$, undergoing edge deletions, and a distinguished source $s in V$, and we are asked to process edge deletions efficiently and answer queries for distance estimates $widetilde{mathbf{dist}}_G(s,v)$ for each $v in V$, at any stage, such that $mathbf{dist}_G(s,v) leq widetilde{mathbf{dist}}_G(s,v) leq (1+ epsilon)mathbf{dist}_G(s,v)$. In the decremental $(1+epsilon)$-approximate All-Pairs Shortest Path (APSP) problem, we are asked to answer queries for distance estimates $widetilde{mathbf{dist}}_G(u,v)$ for every $u,v in V$. In this article, we consider the problems for undirected, unweighted graphs. We present a new emph{deterministic} algorithm for the decremental $(1+epsilon)$-approximate SSSP problem that takes total update time $O(mn^{0.5 + o(1)})$. Our algorithm improves on the currently best algorithm for dense graphs by Chechik and Bernstein [STOC 2016] with total update time $tilde{O}(n^2)$ and the best existing algorithm for sparse graphs with running time $tilde{O}(n^{1.25}sqrt{m})$ [SODA 2017] whenever $m = O(n^{1.5 - o(1)})$. In order to obtain this new algorithm, we develop several new techniques including improved decremental cover data structures for graphs, a more efficient notion of the heavy/light decomposition framework introduced by Chechik and Bernstein and the first clustering technique to maintain a dynamic emph{sparse} emulator in the deterministic setting. As a by-product, we also obtain a new simple deterministic algorithm for the decremental $(1+epsilon)$-approximate APSP problem with near-optimal total running time $tilde{O}(mn /epsilon)$ matching the time complexity of the sophisticated but rather involved algorithm by Henzinger, Forster and Nanongkai [FOCS 2013].
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