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Medical named entity recognition (NER) has wide applications in intelligent healthcare. Sufficient labeled data is critical for training accurate medical NER model. However, the labeled data in a single medical platform is usually limited. Although labeled datasets may exist in many different medical platforms, they cannot be directly shared since medical data is highly privacy-sensitive. In this paper, we propose a privacy-preserving medical NER method based on federated learning, which can leverage the labeled data in different platforms to boost the training of medical NER model and remove the need of exchanging raw data among different platforms. Since the labeled data in different platforms usually has some differences in entity type and annotation criteria, instead of constraining different platforms to share the same model, we decompose the medical NER model in each platform into a shared module and a private module. The private module is used to capture the characteristics of the local data in each platform, and is updated using local labeled data. The shared module is learned across different medical platform to capture the shared NER knowledge. Its local gradients from different platforms are aggregated to update the global shared module, which is further delivered to each platform to update their local shared modules. Experiments on three publicly available datasets validate the effectiveness of our method.
We study the problem of named entity recognition (NER) from electronic medical records, which is one of the most fundamental and critical problems for medical text mining. Medical records which are written by clinicians from different specialties usu
Deep learning has yielded state-of-the-art performance on many natural language processing tasks including named entity recognition (NER). However, this typically requires large amounts of labeled data. In this work, we demonstrate that the amount of
This paper presents a novel framework, MGNER, for Multi-Grained Named Entity Recognition where multiple entities or entity mentions in a sentence could be non-overlapping or totally nested. Different from traditional approaches regarding NER as a seq
Named Entity Recognition (NER) in Few-Shot setting is imperative for entity tagging in low resource domains. Existing approaches only learn class-specific semantic features and intermediate representations from source domains. This affects generaliza
Named entity recognition (NER) is a well-studied task in natural language processing. However, the widely-used sequence labeling framework is difficult to detect entities with nested structures. In this work, we view nested NER as constituency parsin